PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000242.1.g00010.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 873aa MW: 100918 Da PI: 6.0231

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000242.1.g00010.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.8	7.4e-18	57	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 k+Y++Y+k +GF+v+k++s+k ++g+ + tf+Cs+ gk++++++ + + r++t+ +Ckakl+ + dgkw+v+ FANhyb_rscf00000242.1.g00010.1 57 KYYRSYGKGMGFEVCKRTSSKG-DDGKLKYITFTCSRFGKPNSKSRY---AFKFRPVTKSDCKAKLNANFLPDGKWVVS 131 69**************9998.8899************9988...9999********************* PP FAR1 80 kleleHnHela 90 +++l HnH+l+ FANhyb_rscf00000242.1.g00010.1 132 TIVLGHNHDLS 142 *******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-15	57	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-38	264	358	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MDVGYEEEED IDYGNEVISA SSNVEENIDT IESENVKEKI EEPKIGLVFD SIDELEKYYR 60 SYGKGMGFEV CKRTSSKGDD GKLKYITFTC SRFGKPNSKS RYAFKFRPVT KSDCKAKLNA 120 NFLPDGKWVV STIVLGHNHD LSTPSKRRYY KTERDLPSRV KKRLATNDIA GVRPKTSFKS 180 FVVEAGGHEN LTFLEKDVRN YLDKIRRLRL GEGDVAAIQK YFLKMQGDNS NFLYLMDINE 240 EGRLRNVFWA DARSRAAYEE FGDVVTFDTT YLTNKYDMPF APFVGVNHHG QSILLGCGLI 300 SREDIDTFTW LFQSWLTCMS GHAPNAIITD QDRAMQRAIE IVFPNTRHRW CLWHIMKKVP 360 EKLKGYKEKY EPIKCTFQKI VYDSLSCDEF EDRWKVFIEK YNLQNNEWLM GLYEERGRWV 420 PSFVKDTFWA GMSTTQRSES MNAFFDGYVN SKTTLKQFVE QYENALRDKA EKENLADFQS 480 FNSKIPCFTM YNIEKQYYDA YTNEKFKEFQ KELEGKIHCG ISSSVRNGTI TDFTVDEDIK 540 IGTEMRRVPF IVHFNEDMCE VADLADDNEE DYNMVMGILN DLKVKLTQSK VDCERKGDDM 600 KLVEKTSDDE KLSENGCKIL DPLSARSKGR PPVNRKQSTT EQIIRRRKES EAAKACNDKY 660 KLQDFEILNN TSDVFGTQES TLLQASQVCT KLPYAKTNTY TNQFPKGYHQ YIASQTDVTA 720 DDLIYGPKRY EEFKHALNFD KTGYAKKEYW MSMPDMGYLI STYYKVIVIY LSNAQCLTLL 780 PLMLPSELHD LELPEIAIGF VKIGNKGHFV QVNLSSGLVP IPPISSEWHK NNDETAEHLY 840 LRYQAREEKF KQVLPSAHVA SVTKIMDLDD DSA

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MDVGYEEEED IDYGNEVISA SSNVEENIDT IESENVKEKI EEPKIGLVFD SIDELEKYYR  60
SYGKGMGFEV CKRTSSKGDD GKLKYITFTC SRFGKPNSKS RYAFKFRPVT KSDCKAKLNA  120
NFLPDGKWVV STIVLGHNHD LSTPSKRRYY KTERDLPSRV KKRLATNDIA GVRPKTSFKS  180
FVVEAGGHEN LTFLEKDVRN YLDKIRRLRL GEGDVAAIQK YFLKMQGDNS NFLYLMDINE  240
EGRLRNVFWA DARSRAAYEE FGDVVTFDTT YLTNKYDMPF APFVGVNHHG QSILLGCGLI  300
SREDIDTFTW LFQSWLTCMS GHAPNAIITD QDRAMQRAIE IVFPNTRHRW CLWHIMKKVP  360
EKLKGYKEKY EPIKCTFQKI VYDSLSCDEF EDRWKVFIEK YNLQNNEWLM GLYEERGRWV  420
PSFVKDTFWA GMSTTQRSES MNAFFDGYVN SKTTLKQFVE QYENALRDKA EKENLADFQS  480
FNSKIPCFTM YNIEKQYYDA YTNEKFKEFQ KELEGKIHCG ISSSVRNGTI TDFTVDEDIK  540
IGTEMRRVPF IVHFNEDMCE VADLADDNEE DYNMVMGILN DLKVKLTQSK VDCERKGDDM  600
KLVEKTSDDE KLSENGCKIL DPLSARSKGR PPVNRKQSTT EQIIRRRKES EAAKACNDKY  660
KLQDFEILNN TSDVFGTQES TLLQASQVCT KLPYAKTNTY TNQFPKGYHQ YIASQTDVTA  720
DDLIYGPKRY EEFKHALNFD KTGYAKKEYW MSMPDMGYLI STYYKVIVIY LSNAQCLTLL  780
PLMLPSELHD LELPEIAIGF VKIGNKGHFV QVNLSSGLVP IPPISSEWHK NNDETAEHLY  840
LRYQAREEKF KQVLPSAHVA SVTKIMDLDD DSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	163	RRYYKTERDLPSRVKKRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021813341.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251PQZ5	0.0	A0A251PQZ5_PRUPE; Uncharacterized protein
TrEMBL	M5WNR6	0.0	M5WNR6_PRUPE; Uncharacterized protein
STRING	EMJ15417	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-120	FAR1 family protein