PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000243.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 756aa    MW: 81823.5 Da    PI: 6.5786
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000243.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS72.11e-22415504291
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                      +lLl+cAeavs+++ e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+s+++ ++s++ ++a
  FANhyb_rscf00000243.1.g00002.1 415 LTLLLQCAEAVSADNYEEATKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPVSAAPVTHSQKLVSA 493
                                     579**************************************************************************** PP

                            GRAS  81 lklfsevsPil 91 
                                     +++f+ +sP+ 
  FANhyb_rscf00000243.1.g00002.1 494 FQVFNGISPFA 504
                                     *********85 PP
2GRAS224.93.9e-69519743137374
                            GRAS 137 egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld 215
                                      g p +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +l++++L+++++Ea+aV++    h+l+d
  FANhyb_rscf00000243.1.g00002.1 519 VGRPYVRLTGLGT----SMEALEATGKRLTDFADKLGLPFEFFP-VAEKVGSLDPDRLNISKREAVAVHWLQ--HSLYD 590
                                     6899*********....***************************.7*************************9..99999 PP

                            GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                      ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++ll+rei
  FANhyb_rscf00000243.1.g00002.1 591 VTGSDAN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREI 664
                                     9999999....**********************.899****************************************** PP

                            GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                     +nv+a  g  r  + + +++Wre+++++GF+ ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaW
  FANhyb_rscf00000243.1.g00002.1 665 RNVLAVGGPLRSGEVK-FHNWREKFQQSGFRGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAW 742
                                     **********888776.************************************************************** PP

                            GRAS 374 r 374
                                     r
  FANhyb_rscf00000243.1.g00002.1 743 R 743
                                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.125388723IPR005202Transcription factor GRAS
PfamPF035143.6E-20415504IPR005202Transcription factor GRAS
PfamPF035141.4E-66519743IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MAACALLGDS GDHVSGNGSN NNNSSASHSP LNSTSQGSSV VEQQQQNPAR SKMVRKRMAS  60
EIEVQPNSIR SSSNNNNGDD YMRVSRNRSV MLNPNTTHDK VSNYSTTMLN LPVPSSSLMT  120
SGGGGGVLST ASASSSSPAW GPIDPLSLHP IHHTQIAATA PLPAVCGFSG LPLFPPERTA  180
PSNHPSSTLT TVMDHQDSSA TAWIDGIIKD LINSSTSVSI PQLIQNVREI IFPCNPNLAS  240
LLEYRLRSIS EPPPPPIPAF NNRRRDQGPG LKLNIDSTSI NDVTTVFPTD SGSHHVMNNQ  300
ELYLNWGAAT TLPQQHQPQQ HQQPNPTSSP TCNESNLQPQ QHHIISQAVQ PQLQQPQRLD  360
KQPQQNSPSP AAESPQAAPP SATPAPATQS PAALLREKKE EMRQQQRDEE GLHLLTLLLQ  420
CAEAVSADNY EEATKMLLEI SELSTPFGTS AQRVAAYFSE AMSARLVSSC LGIYASLPVS  480
AAPVTHSQKL VSAFQVFNGI SPFAYNGRGS STFSPPAPVG RPYVRLTGLG TSMEALEATG  540
KRLTDFADKL GLPFEFFPVA EKVGSLDPDR LNISKREAVA VHWLQHSLYD VTGSDANTLW  600
LLQRLAPKVV TVVEQDLSHA GSFLGRFVEA IHYYSALFDS LGASYGEESE ERHVVEQQLL  660
SREIRNVLAV GGPLRSGEVK FHNWREKFQQ SGFRGISLAG NAATQATLLL GMFPSDGYTL  720
VEDNGTLKLG WKDLCLLTAS AWRPPYHATT NPNLHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03987443380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305056.10.0PREDICTED: protein SCARECROW
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA0A2P6R8290.0A0A2P6R829_ROSCH; Putative transcription factor GRAS family
STRINGXP_004305056.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein