PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000244.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 645aa MW: 71288.7 Da PI: 8.3898

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000244.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	75	96	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F + n++rHir+H FANhyb_rscf00000244.1.g00002.1 75 KCDKCPREFCSTINYRRHIRVH 96 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.951	74	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MPIAKLTDSN TDAMKSDEGN DSLDTIIRQV AKEPSISFSR AGDSPVPWIQ LLHALDQQEL 60 PGWPLHSPIK VQMQKCDKCP REFCSTINYR RHIRVHHRLK KLDKDSTKNR DLLGEFWDKL 120 STEEAKESVS FKNVNLEEVA GSSIIKSLTT LIRKPGFTSL PHIYLKAGSA LLDIIQARPS 180 RFPISSQELF SILDDASEKT FMSGTATSMQ RYIFDGDAGK VKAWHAYKDA EALRLQKLLV 240 EEEEAARERQ KELKAKDLER VNGKESIDEP LEETSSHSTT VDSDSPISDV LDHAHSSAEA 300 FQDSSTNENV DPESQTVNAC GQADPSNGTN VERRTVQGGG TRRAVARWQV LPKSQRGVPN 360 GVHASQSSQT SKLPSMQNHG SYWDSRAVSG SNKVWSRKPK PQNDGGSLKA GVQKDATEPD 420 QIKNHEVLIG SISVTLGNSC QESNNLAGFR DDGLLEQQMP KNNFQDKTNK PDSVQSSTNR 480 STVKLWRPVS RNGTKGPPMP VQNGCRESET DVAAEKRHSR TIRNGTCPND VIRNGSTQAG 540 SLGFSSRAAK DFLAQRWKEA IAGDHVELVL FEGSEPPRCP DIDSEVAVTH SLRFKRSILG 600 NAENRLVNVE AAEPPVTGAD KVKYRSKKPE KGVKIKYIPK QNTVT

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MPIAKLTDSN TDAMKSDEGN DSLDTIIRQV AKEPSISFSR AGDSPVPWIQ LLHALDQQEL  60
PGWPLHSPIK VQMQKCDKCP REFCSTINYR RHIRVHHRLK KLDKDSTKNR DLLGEFWDKL  120
STEEAKESVS FKNVNLEEVA GSSIIKSLTT LIRKPGFTSL PHIYLKAGSA LLDIIQARPS  180
RFPISSQELF SILDDASEKT FMSGTATSMQ RYIFDGDAGK VKAWHAYKDA EALRLQKLLV  240
EEEEAARERQ KELKAKDLER VNGKESIDEP LEETSSHSTT VDSDSPISDV LDHAHSSAEA  300
FQDSSTNENV DPESQTVNAC GQADPSNGTN VERRTVQGGG TRRAVARWQV LPKSQRGVPN  360
GVHASQSSQT SKLPSMQNHG SYWDSRAVSG SNKVWSRKPK PQNDGGSLKA GVQKDATEPD  420
QIKNHEVLIG SISVTLGNSC QESNNLAGFR DDGLLEQQMP KNNFQDKTNK PDSVQSSTNR  480
STVKLWRPVS RNGTKGPPMP VQNGCRESET DVAAEKRHSR TIRNGTCPND VIRNGSTQAG  540
SLGFSSRAAK DFLAQRWKEA IAGDHVELVL FEGSEPPRCP DIDSEVAVTH SLRFKRSILG  600
NAENRLVNVE AAEPPVTGAD KVKYRSKKPE KGVKIKYIPK QNTVT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011470341.1	0.0	PREDICTED: uncharacterized protein LOC101313259
TrEMBL	A0A2P6SN64	0.0	A0A2P6SN64_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004308069.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-112	C2H2-like zinc finger protein