PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000245.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 277aa    MW: 31188.3 Da    PI: 6.0455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000245.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-1955103355
                             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  FANhyb_rscf00000245.1.g00010.1  55 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 103
                                     9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.77554111IPR001471AP2/ERF domain
SMARTSM003804.8E-3954117IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2254112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-3254112IPR001471AP2/ERF domain
CDDcd000183.43E-3455112No hitNo description
PRINTSPR003676.7E-125566IPR001471AP2/ERF domain
PfamPF008475.4E-1255103IPR001471AP2/ERF domain
PRINTSPR003676.7E-127793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MCGGAIIAEL HPSQPPPCLR RDMAGQFLQL RSHHTLSQGG VQEQKPAKRQ RKNLYRGIRQ  60
RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDREARK IRGKKAKVNF PNEDDQDYNP  120
HQTHLRVSNS NPAHHPFQPN NTGNFSDNHM GYDLNQSYQT IAFPSNSNGF VVNTTDPIVF  180
SGEENSGSGS EGAYSSTGLV GCNHNEKEKE ESIQGNTIVA AEENEVQKLS EELMAYENYM  240
KFYQIPYLDG QSISPVNPTA QESMVGDLWS FDDENEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2355111360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290816.11e-168PREDICTED: ethylene-responsive transcription factor ERF071 isoform X1
TrEMBLA0A0E3Z5C21e-136A0A0E3Z5C2_ROSCH; Putative AP2/ERF2 protein
STRINGXP_004290816.11e-168(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-34ERF family protein