PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000255.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 559aa MW: 63267.2 Da PI: 8.5143

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000255.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.5	2.2e-52	23	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t FANhyb_rscf00000255.1.g00001.1 23 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKFDPWDLPKLAASGEKEWYFYCPRDRKYRNSTRPNRVTG 100 579*************************.89***********8888899******************** PP NAM 80 sgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+Wkatg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl FANhyb_rscf00000255.1.g00001.1 101 AGFWKATGTDRPIYSSegnSNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 152 ***********96655556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-57	22	187	IPR003441	NAC domain
PROSITE profile	PS51005	56.56	23	187	IPR003441	NAC domain
Pfam	PF02365	2.4E-25	25	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MDQERSSSGD MSAADQDKID EVMLPGFRFH PTDEELVGFY LKRKIQQRPL SIELIKQLDI 60 YKFDPWDLPK LAASGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSEGNS 120 NKCIGLKKSL VFYKGRAAKG VKTDWMMHEF RLPSLTDSSV VPSKRSFMDK IAIPANDSWA 180 ICRIFKKTNT SAHQRAISHH SWVSQTLPEP NTFQDHVLGS SRLGAQTTNT TQYSGNNIII 240 ETQQISTSTT TSTLSPVDNY YANNPYKTLH PSIPCNLKPY HQYFPISNAG DYFNPNFTFS 300 PLENPAAKCS ADISSLLLNM SSSVLGDFGT KLASAESSTT FDFSSTTDSQ EQQCNNGFSS 360 SLTTIPHHEL MQETDDHEHW ESSLQSSSIG FPFMSSLPVI PMNIGGGDAW KSNLTWDSSP 420 CPRFDWAAEM VVDSASSRLT GCLVSTRRKK KHCDSLSRLG RRRKRERKRE RDDGVCVKLR 480 KVAIVDVTKA QTDRGLHHLK TLYTNWKTEE GSVFALSVLL KTKNPECDSE MEDHKKKQSI 540 EEDRPVRVCL VEIYIPHQK

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MDQERSSSGD MSAADQDKID EVMLPGFRFH PTDEELVGFY LKRKIQQRPL SIELIKQLDI  60
YKFDPWDLPK LAASGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSEGNS  120
NKCIGLKKSL VFYKGRAAKG VKTDWMMHEF RLPSLTDSSV VPSKRSFMDK IAIPANDSWA  180
ICRIFKKTNT SAHQRAISHH SWVSQTLPEP NTFQDHVLGS SRLGAQTTNT TQYSGNNIII  240
ETQQISTSTT TSTLSPVDNY YANNPYKTLH PSIPCNLKPY HQYFPISNAG DYFNPNFTFS  300
PLENPAAKCS ADISSLLLNM SSSVLGDFGT KLASAESSTT FDFSSTTDSQ EQQCNNGFSS  360
SLTTIPHHEL MQETDDHEHW ESSLQSSSIG FPFMSSLPVI PMNIGGGDAW KSNLTWDSSP  420
CPRFDWAAEM VVDSASSRLT GCLVSTRRKK KHCDSLSRLG RRRKRERKRE RDDGVCVKLR  480
KVAIVDVTKA QTDRGLHHLK TLYTNWKTEE GSVFALSVLL KTKNPECDSE MEDHKKKQSI  540
EEDRPVRVCL VEIYIPHQK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-55	11	191	4	169	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-55	11	191	4	169	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-55	11	191	4	169	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-55	11	191	4	169	NO APICAL MERISTEM PROTEIN
3swm_A	7e-55	11	191	7	172	NAC domain-containing protein 19
3swm_B	7e-55	11	191	7	172	NAC domain-containing protein 19
3swm_C	7e-55	11	191	7	172	NAC domain-containing protein 19
3swm_D	7e-55	11	191	7	172	NAC domain-containing protein 19
3swp_A	7e-55	11	191	7	172	NAC domain-containing protein 19
3swp_B	7e-55	11	191	7	172	NAC domain-containing protein 19
3swp_C	7e-55	11	191	7	172	NAC domain-containing protein 19
3swp_D	7e-55	11	191	7	172	NAC domain-containing protein 19
4dul_A	6e-55	11	191	4	169	NAC domain-containing protein 19
4dul_B	6e-55	11	191	4	169	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	448	464	KKKHCDSLSRLGRRRKR
2	460	470	RRRKRERKRER
3	461	469	RRKRERKRE

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011463074.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor JUNGBRUNNEN 1
Swissprot	Q9ZVH0	3e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2P6R2Y3	0.0	A0A2P6R2Y3_ROSCH; Putative transcription factor NAM family
STRING	XP_008390053.1	1e-176	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	3e-98	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]