PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000261.1.g00013.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SRS

Protein Properties

Length: 221aa MW: 24600.5 Da PI: 8.4015

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000261.1.g00013.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	179	2.1e-55	21	177	5	153
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrk 75 +++C+dCGn+akk+C+++RCRtCCk++gf+C+thvkstWvp +kr+ ++q+++ +++++ + skr FANhyb_rscf00000261.1.g00013.1 21 RSRCEDCGNKAKKECVYMRCRTCCKNKGFQCQTHVKSTWVPLYKRSLLHEQQHSYDDYHQQQRlavdqghvFINPSKRL 99 579****************************************9877766666555555545666653333344444 PP DUF702 76 relkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGl 152 r+ ++ s+++ ++ + + e++++P+ev+++a f+ vrvss+dd + +++aYqt+v+igGhvf+GiLydqG+ FANhyb_rscf00000261.1.g00013.1 100 RQ--HNPCSSSAVNLSMEGLDRDHQEANNFPAEVNTMAKFQGVRVSSMDDmvDLDQYAYQTSVTIGGHVFRGILYDQGP 176 44..4555555555555677788899999*****************766689********************9 PP DUF702 153 e 153 + FANhyb_rscf00000261.1.g00013.1 177 A 177 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-52	22	176	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.9E-26	24	65	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-21	127	176	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MVRLRQGGGG GGGQGLTMGS RSRCEDCGNK AKKECVYMRC RTCCKNKGFQ CQTHVKSTWV 60 PLYKRSLLHE QQHSYDDYHQ QQRLAVDQGH VFINPSKRLR QHNPCSSSAV NLSMEGLDRD 120 HQEANNFPAE VNTMAKFQGV RVSSMDDMVD LDQYAYQTSV TIGGHVFRGI LYDQGPAVHQ 180 MSSYTTSASA ADQPHLPTSF SYQLVNPFNS SMPAGSHHPV V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011458269.1	1e-162	PREDICTED: protein SHI RELATED SEQUENCE 1 isoform X1
TrEMBL	A0A2P6PPR9	1e-113	A0A2P6PPR9_ROSCH; Putative transcription factor STY-LRP1 family
STRING	XP_004292419.1	1e-160	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	2e-42	SHI-related sequence3