PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000268.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 391aa MW: 44061.2 Da PI: 6.3372

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000268.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.9	4.3e-26	54	136	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W ++e++ Li +rre++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk ++++k + +s ++ FANhyb_rscf00000268.1.g00003.1 54 WIQEETRSLISFRREVDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKARHQAKVG--SRSAKMT 130 ******************************************************************98..4555899 PP trihelix 81 yfdqle 86 y+++l+ FANhyb_rscf00000268.1.g00003.1 131 YYEDLQ 136 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-4	45	114	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.42	46	110	IPR017877	Myb-like domain
SMART	SM00717	0.0049	50	112	IPR001005	SANT/Myb domain
CDD	cd12203	2.10E-27	52	117	No hit	No description
Pfam	PF13837	4.6E-19	53	138	No hit	No description
SuperFamily	SSF46689	9.96E-5	54	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MYLSEKPHPI DFYKSSSSPD RDVMMDVVSA AAANTSSGGE DHEVRAPKKR AETWIQEETR 60 SLISFRREVD GLFNTSKSNK HLWEQISAKM RDKGFDRSPT MCTDKWRNLL KEFKKARHQA 120 KVGSRSAKMT YYEDLQELLR GRTSSHNSNS AANNAAASNG AAGGSYKRPN SPPKLESFIR 180 FSDKSLEDAG IPFGPMEAAE RTAVDLERQL DHDGDPLAIT TGDAVAGNEV PPWNWREGPE 240 NGGEGHSSYC GRIITVKLGE YNTRRIGIDG TADAIKEAIK SAFRIRTKRA FWLEDEYQVV 300 RSLDRDMPLG NYTLHLDEGV TIKLCLCDES DRIVRTEEIT FYTEDDFRDF LTRRGLIGLR 360 DLRELGGYRR IDTLDDLQSG AMYQGVRLLG D

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MYLSEKPHPI DFYKSSSSPD RDVMMDVVSA AAANTSSGGE DHEVRAPKKR AETWIQEETR  60
SLISFRREVD GLFNTSKSNK HLWEQISAKM RDKGFDRSPT MCTDKWRNLL KEFKKARHQA  120
KVGSRSAKMT YYEDLQELLR GRTSSHNSNS AANNAAASNG AAGGSYKRPN SPPKLESFIR  180
FSDKSLEDAG IPFGPMEAAE RTAVDLERQL DHDGDPLAIT TGDAVAGNEV PPWNWREGPE  240
NGGEGHSSYC GRIITVKLGE YNTRRIGIDG TADAIKEAIK SAFRIRTKRA FWLEDEYQVV  300
RSLDRDMPLG NYTLHLDEGV TIKLCLCDES DRIVRTEEIT FYTEDDFRDF LTRRGLIGLR  360
DLRELGGYRR IDTLDDLQSG AMYQGVRLLG D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-43	48	134	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004304014.1	0.0	PREDICTED: trihelix transcription factor GT-1-like
Swissprot	Q9FX53	1e-152	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2P6S654	0.0	A0A2P6S654_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004304014.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-153	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]