PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000286.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 189aa    MW: 20497.3 Da    PI: 9.1525
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000286.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00164567123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ++C+ C++ F++   L  H  +H
  FANhyb_rscf00000286.1.g00007.1 45 FECKTCNRQFPSFQALGGHRASH 67
                                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.68E-943115No hitNo description
PfamPF139123.2E-134469IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274572IPR007087Zinc finger, C2H2
SMARTSM003550.164567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.4E-992117IPR007087Zinc finger, C2H2
PROSITE profilePS501578.99593120IPR007087Zinc finger, C2H2
SMARTSM003550.6193115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKRSITELDH SVTMANCLML LSRGNDYDSL ISTTSSSMSS PSRVFECKTC NRQFPSFQAL  60
GGHRASHKKP RLAGGDGSSS DSQSSSPSKP KTHECNICGL EFAIGQALGG HMRRHRAAVT  120
DNDHRNLNGA QSKPMMGLSS NLGQGVVPVL KKTNSSRRVL CLDLNLTPFE NDMEILGIGK  180
TTPLVEFIF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307547.11e-112PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A2P6SK744e-97A0A2P6SK74_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004307547.11e-112(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-37C2H2 family protein