PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000303.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 439aa    MW: 48844.2 Da    PI: 9.4546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000303.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-17286335255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                      ++GVr++  +g+WvAeIr+p+    r +r +lg+f t  eAa a++ a++kl+g
  FANhyb_rscf00000303.1.g00002.1 286 TFRGVRQRT-WGKWVAEIREPK----RgARLWLGTFNTSTEAALAYDDAARKLYG 335
                                     69****999.**********83....46************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.01E-29285345No hitNo description
Gene3DG3DSA:3.30.730.101.8E-29286344IPR001471AP2/ERF domain
SMARTSM003803.5E-36286349IPR001471AP2/ERF domain
PROSITE profilePS5103221.509286343IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-20286344IPR016177DNA-binding domain
PfamPF008479.2E-12287335IPR001471AP2/ERF domain
PRINTSPR003676.7E-9287298IPR001471AP2/ERF domain
PRINTSPR003676.7E-9309325IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAATITASAA SMTTHLISKL SLSNQEELVD LGKLWFPNKG GDRYLFTFSN EQDMIWVKKG  60
WPWGYQRAMI LLNDYDGFSN IMAMSLDFLK FSVGSYGNLG IAHIGKSLKK HGRTRGSRNK  120
KKNNGVASAP WHPFQWRASD ERCWNRSRFM LPFLFVIGAY GFKEGTLGSF EARAVPEPLA  180
KAQGGGPVRS MLFAVPKKPQ GLYDPSPEKP QGPSATLKRK EEEERLCRLL EQHLAKLLFY  240
TCPLPCHFSP NYLKDQEAKV TQKANMGRSR KGCMKGKGGP ENATCTFRGV RQRTWGKWVA  300
EIREPKRGAR LWLGTFNTST EAALAYDDAA RKLYGSSAKL NLPDQSSSSA STSSKTSSGS  360
SSNDKGGGGE HNNIKQEAYN SCDDVHRGWN NDYNNGEISD YCLWESNPVL SADWSGVCGE  420
REFLEMNDIG VMMGGNEYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-17287343360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-17287348668ATERF1
3gcc_A8e-17287348668ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-44ERF family protein