PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000307.1.g00012.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 118aa MW: 13061.7 Da PI: 4.2389

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000307.1.g00012.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	57.1	5.4e-18	2	53	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lp ++r+da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la++++e FANhyb_rscf00000307.1.g00012.1 2 LPVHQRTDAVSSLVYEANARVRDPVYGCVGAISCLQNQVSELQMQLAVAQAE 53 6889********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.317	1	54	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-16	2	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
ELPVHQRTDA VSSLVYEANA RVRDPVYGCV GAISCLQNQV SELQMQLAVA QAEILCIQMQ 60 QESTVLPSQP IDSCIDNERT YFLNNSLPQY LNFPSSSSSN VIHDSLKMEG IFGHDMVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-20	1	67	58	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-20	1	67	58	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011469944.1	1e-81	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	5e-33	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2P6SLE9	2e-71	A0A2P6SLE9_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_008233810.1	7e-58	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-35	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]