PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000309.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 442aa    MW: 48706.8 Da    PI: 7.4557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000309.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-192067148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+eEd+ll + v+++G g+W+++ar+ g++R++k+c++rw +yl
  FANhyb_rscf00000309.1.g00008.1 20 KGPWTPEEDKLLSEHVNLHGEGRWSSVARCTGLNRSGKSCRLRWVNYL 67
                                    79********************************************97 PP
2Myb_DNA-binding50.16.5e-1673117147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  FANhyb_rscf00000309.1.g00008.1  73 RGHLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 117
                                     6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0821567IPR017930Myb domain
SuperFamilySSF466898.59E-3117114IPR009057Homeodomain-like
SMARTSM007173.5E-171969IPR001005SANT/Myb domain
PfamPF002491.0E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-222174IPR009057Homeodomain-like
CDDcd001673.90E-132267No hitNo description
PROSITE profilePS5129424.78368122IPR017930Myb domain
SMARTSM007177.9E-1472120IPR001005SANT/Myb domain
PfamPF002497.7E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2375121IPR009057Homeodomain-like
CDDcd001672.97E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAMAGVMMGW GGVEERGWRK GPWTPEEDKL LSEHVNLHGE GRWSSVARCT GLNRSGKSCR  60
LRWVNYLRPG LKRGHLTPQE EGIIIELHAL WGNKWSTIAR YLPGRTDNEI KNYWRTHFKK  120
KDKCTEKQKK RKAQILKQKQ QQLEDVENDH ENKKIKSAST STALQGHGEA LACSSELQNN  180
NVITDELQQL AQATQEMNVV FTCPNMDEIQ SFPALASMNQ LGGTSTSVVE STIWSSDNTA  240
IINIGSEDDQ GLWGQLWNLD DDHCHVQANR MEPHMSCSNS ESLNRLALHQ NQAITATSSG  300
AIHTGATRVN NFSWGEDIHT DNKTQGSKQR EDMDNITASE LAGFGVGTLL LCATIAAPKI  360
DAFISGSQRI SLGMCKRCGN VRKIACSTCR GTGLVKEGGI AGFNLIDDLY QSLGGDESRV  420
GSIACIKCQA KGHFSCPDCS KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-242012127127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306055.20.0PREDICTED: transcription factor WER
TrEMBLA0A2P6S3Q01e-177A0A2P6S3Q0_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004306055.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1184223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-62myb domain protein 121