PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000311.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 570aa    MW: 64691.9 Da    PI: 5.967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000311.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.19e-15324369555
                                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                     +  +Er+RR+++N+++ +Lr+l+P+ +      K++Ka+iL+ A++Y+k+Lq
  FANhyb_rscf00000311.1.g00008.1 324 NFVAERKRRKKLNEKLYKLRSLVPNiS------KMDKASILKDAIDYVKDLQ 369
                                     6789*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-936179IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.07E-16318373No hitNo description
SuperFamilySSF474596.02E-19318380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.384319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-12323369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-18325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17326378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00114456516No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MVKRGGHKSI GINKYSCHQY LTGVMNMTMY NLIIERLRPL VGLKGWDYCP VEVGFRFIEW  60
IGCCCSGIDE DSQNGGQELL FPVYQVFRCR DTMQHSRTSS CDILSSLPSS MPLDSGIYAK  120
TIMSNQPCWL NCSSSNRDSS AMLERDGTRV LVPTAGGLMI ELFVSNYVSE DQHVIDFITA  180
QCNIWREQDT LISASNTCST NTPVLSPSMA SLDPHDVNLP YDITVDRIRL CSSESSSPLN  240
FLQHVTSYNS ENRMKNSPSA CTYDQGNSHE YSLDQPLENM EQQGTLDDQD SIKQADHSAS  300
DCSDQTDENT NYKRRNGKEP QSKNFVAERK RRKKLNEKLY KLRSLVPNIS KMDKASILKD  360
AIDYVKDLQR QVKELQDVLE DNSNVGGAKR TFNSISGNYN NYQSENQHGI SMANKTESDK  420
PQNGYHDSDH NTNEKGQQQM EPQVGVTQLD GNEFFVTVFC EQKPEGFVRL MEALDSLGLE  480
VTNANVTSFR SLVSNVFKKR DSEILQADEV RDSLLEITRN PSKGYWPEMA KAKASGNDRS  540
LDYDHDNKHH YHHHLHNYHN STCHLQHLYD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312333KRRNGKEPQSKNFVAERKRRKK
2327334ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458681.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
TrEMBLA0A2P6PSS10.0A0A2P6PSS1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292631.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-98bHLH family protein