PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000314.1.g00016.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 112aa    MW: 12434.7 Da    PI: 11.0592
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000314.1.g00016.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-172465142
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                    k+i+n   rqvtf kRr g+lKKA ELSvLCd  va  + s+
  FANhyb_rscf00000314.1.g00016.1 24 KKIDNLPVRQVTFLKRRRGLLKKAGELSVLCDLTVAAAVRSE 65
                                    6899999****************************9877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-171673IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.11665IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-191767IPR002100Transcription factor, MADS-box
CDDcd001206.64E-181765No hitNo description
PRINTSPR004042.9E-141838IPR002100Transcription factor, MADS-box
PfamPF003192.3E-142566IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-143853IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-145374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MDSKVFSTIA IAMTKRARNK IKIKKIDNLP VRQVTFLKRR RGLLKKAGEL SVLCDLTVAA  60
AVRSEAEYGV HSKKQGTPSS FVQSASHSQG YYGVCKVARI LHKMKLASFV HC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9A1S93e-13B9A1S9_PRUMU; Dormancy-associated MADS-box transcription factor 6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-10AGAMOUS-like 24