PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000326.1.g00006.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HB-PHD

Protein Properties

Length: 1366aa MW: 149350 Da PI: 4.9501

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000326.1.g00006.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.7	3.5e-07	1179	1214	9	44
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqV 44 + +++L + F++n+yp+++++e+LA++lg+ +qV FANhyb_rscf00000326.1.g00006.1 1179 EAVTQRLYTSFKENQYPDRSMKERLAQELGVMAKQV 1214 567899***************************999 PP
2	PHD	35.1	3.1e-12	803	858	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l see+p + wlC+ C++k FANhyb_rscf00000326.1.g00006.1 803 FCAKCGSldVCADNDIILCDGaCDRGFHQHCLEPPLLSEEIPPDdeGWLCPGCDCK 858 6999*87778****66***************99999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.59E-12	793	861	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.6E-11	799	858	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.932	801	858	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	9.6E-10	803	858	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	3.0E-8	803	856	IPR001965	Zinc finger, PHD-type
CDD	cd15504	6.43E-27	803	855	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-9	1147	1213	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.73E-6	1170	1257	IPR009057	Homeodomain-like
SMART	SM00389	9.6E-4	1171	1265	IPR001356	Homeobox domain
CDD	cd00086	1.52E-5	1175	1214	No hit	No description
Pfam	PF00046	9.4E-5	1179	1214	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.2E-9	1247	1256	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1366 aa Download sequence Send to blast
MQVSNGVAIS VMRLVAYLKG LIHLKSVELL FSLRKCPNGF IGAGGVIRDE VGEWDSELIY 60 TGVARPLIEH FLRPLGISLM KRKDISHFHS VQLRQIHKDG EYGGRSSTFF PFWARVTGSY 120 IRTESVTDPN SANRWFDCAA RMLLVFGSGD EVRAQLRMSF HSFRPAGVWC INATSSDAFG 180 DVTEKSHPEQ LGLPPEDASN SSQGGVNLLA NSAHGHQFGS VRIQNGLLQT TTALSGYTTS 240 GHLQPFFGNV TKNSLAEPLE LPPEESLEDL GLNCQTGKTA CSERISLEQR NDFGFGTSSS 300 ETREEKQHIG SDSVQNELLQ TSIPVSSCGR EQLQLITESV NMTFPNEQAR VPPKDVSKTL 360 EPTNNFGFGT SSSVLAEDKQ HFGSDVPQNE ALQSQYWTGT IRLEVPSCDG NEPLQSFCEN 420 VDICSLDEKA GLPCEGVKKT LKQINDVSSG TSYSQPTEEN QNLGSSFVQD EPLQTIIPVV 480 SSGGNEQLQV VNENVSVTSL GEQAGLPPEA VSKTCQTDKL SRSLHTASDQ INESGSGSVQ 540 CEPQEQRDQL GSLPSQNDQV KNSTAVSSSI GFEQLGPSVD EMNNSVIGHL EPPPEDASKD 600 HNEELIKPHT NDATQNSCLE PSETASKNAS KNSTQFGCKD KRNSSSRRKS RSLVSSDRVL 660 RSRTSEKPEA PELSNNVATL DTSNSVANVS NEKEGKRKKR KKKHRERVAA DEFSRIRSHL 720 RYFLNRINYE KSLIDAYSGE GWKGNSLEKL KPEKELQRAT SEILRRKSKI RDLFQRLDSL 780 CAEGMFPESL FDEEGQIDSE DIFCAKCGSL DVCADNDIIL CDGACDRGFH QHCLEPPLLS 840 EEIPPDDEGW LCPGCDCKVD CIDLLNDSQG TDLSITDSWE KVFPEAAVAA SAGQHQENNQ 900 GLPSDDSDDN DYDPDGPETD EEVQEAESSS DESEYASASD GLETPKTNDE QYLGLPSDDS 960 EDDDFNPDAP DPTEDVKQGS SSSDFTSDSE DLAAVLDEDS KSFENGEGPQ SSVLEASALL 1020 RGSGGKGSKR GQKRHSIKDE LSSLIESDPG QDGSTPVSGK RHVVRLDYKK LHDEEYGDIP 1080 TSDDEEYIET AVPRKRKKGS GQVSPGSLKG KPSTIKKGKT TKDIKDDPDK NEHTPRRTPR 1140 RKSSANDNSS SPNELLKSSP KSGSTSGRAK GSTYRRLGEA VTQRLYTSFK ENQYPDRSMK 1200 ERLAQELGVM AKQVIPSLFS ASALQIPFFR KNVTLYTVFC VAVLLQVSKW FENARHCVKA 1260 GLALPQAMRT QPNQAETSIN DADHDGAQKN ESPGTADAVA GSCSQDVKDN KSATPKSSRA 1320 KTSSPKGRKR KSKSDPGGSD LDEKFKTPPE TSRRGGRVTR RRTSVA

Sequence ? help Back to Top

Protein Sequence Length: 1366 aa Download sequence Send to blast

MQVSNGVAIS VMRLVAYLKG LIHLKSVELL FSLRKCPNGF IGAGGVIRDE VGEWDSELIY  60
TGVARPLIEH FLRPLGISLM KRKDISHFHS VQLRQIHKDG EYGGRSSTFF PFWARVTGSY  120
IRTESVTDPN SANRWFDCAA RMLLVFGSGD EVRAQLRMSF HSFRPAGVWC INATSSDAFG  180
DVTEKSHPEQ LGLPPEDASN SSQGGVNLLA NSAHGHQFGS VRIQNGLLQT TTALSGYTTS  240
GHLQPFFGNV TKNSLAEPLE LPPEESLEDL GLNCQTGKTA CSERISLEQR NDFGFGTSSS  300
ETREEKQHIG SDSVQNELLQ TSIPVSSCGR EQLQLITESV NMTFPNEQAR VPPKDVSKTL  360
EPTNNFGFGT SSSVLAEDKQ HFGSDVPQNE ALQSQYWTGT IRLEVPSCDG NEPLQSFCEN  420
VDICSLDEKA GLPCEGVKKT LKQINDVSSG TSYSQPTEEN QNLGSSFVQD EPLQTIIPVV  480
SSGGNEQLQV VNENVSVTSL GEQAGLPPEA VSKTCQTDKL SRSLHTASDQ INESGSGSVQ  540
CEPQEQRDQL GSLPSQNDQV KNSTAVSSSI GFEQLGPSVD EMNNSVIGHL EPPPEDASKD  600
HNEELIKPHT NDATQNSCLE PSETASKNAS KNSTQFGCKD KRNSSSRRKS RSLVSSDRVL  660
RSRTSEKPEA PELSNNVATL DTSNSVANVS NEKEGKRKKR KKKHRERVAA DEFSRIRSHL  720
RYFLNRINYE KSLIDAYSGE GWKGNSLEKL KPEKELQRAT SEILRRKSKI RDLFQRLDSL  780
CAEGMFPESL FDEEGQIDSE DIFCAKCGSL DVCADNDIIL CDGACDRGFH QHCLEPPLLS  840
EEIPPDDEGW LCPGCDCKVD CIDLLNDSQG TDLSITDSWE KVFPEAAVAA SAGQHQENNQ  900
GLPSDDSDDN DYDPDGPETD EEVQEAESSS DESEYASASD GLETPKTNDE QYLGLPSDDS  960
EDDDFNPDAP DPTEDVKQGS SSSDFTSDSE DLAAVLDEDS KSFENGEGPQ SSVLEASALL  1020
RGSGGKGSKR GQKRHSIKDE LSSLIESDPG QDGSTPVSGK RHVVRLDYKK LHDEEYGDIP  1080
TSDDEEYIET AVPRKRKKGS GQVSPGSLKG KPSTIKKGKT TKDIKDDPDK NEHTPRRTPR  1140
RKSSANDNSS SPNELLKSSP KSGSTSGRAK GSTYRRLGEA VTQRLYTSFK ENQYPDRSMK  1200
ERLAQELGVM AKQVIPSLFS ASALQIPFFR KNVTLYTVFC VAVLLQVSKW FENARHCVKA  1260
GLALPQAMRT QPNQAETSIN DADHDGAQKN ESPGTADAVA GSCSQDVKDN KSATPKSSRA  1320
KTSSPKGRKR KSKSDPGGSD LDEKFKTPPE TSRRGGRVTR RRTSVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	696	702	RKKRKKK
2	1093	1097	RKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011457795.1	0.0	PREDICTED: homeobox protein HAT3.1 isoform X2
TrEMBL	A0A2P6PLL0	0.0	A0A2P6PLL0_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004289744.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8437	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-83	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain