PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000332.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YA
Protein Properties Length: 345aa    MW: 38197.1 Da    PI: 9.8043
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000332.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.58.3e-32186242158
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     dep+YVNaKQy++Il+RRq Rakle+++kl  k rkpylheSRh hAl+R+RgsgGrF
  FANhyb_rscf00000332.1.g00003.1 186 DEPIYVNAKQYRAILRRRQFRAKLEAQNKL-VKVRKPYLHESRHVHALKRARGSGGRF 242
                                     79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-36184245IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.852185245IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-26187242IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.9E-23188210IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860190210IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.9E-23219242IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGVSLPHCRR TKKSGEHVQD QDSSSTQSDG QSHSEMASLK EGNPCGLGVV SGYNEIQGRL  60
VGGHKKSLSS ITSQEFVFPS QLDFSRSMAH VPFHRAEPFY GGLIAAYGPQ AMFKIFFMSI  120
SPISKVYRYT LLTISGSIVL ILQSSGVDIG SDSFVLQSNY ELQFHHPQMM GISPGRVPLP  180
LDLTEDEPIY VNAKQYRAIL RRRQFRAKLE AQNKLVKVRK PYLHESRHVH ALKRARGSGG  240
RFLNMKKLQG SKPNSTSHRV DVSGSAQLHL TGNMSEPNVH EADNYRDGAS TTSCSDITST  300
SNSDDIFPRQ DFRFSGYPSH MGGTLQVPLV DFHGGGNQQH VSIFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19186247263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467407.10.0PREDICTED: nuclear transcription factor Y subunit A-3
RefseqXP_011467408.10.0PREDICTED: nuclear transcription factor Y subunit A-3
TrEMBLA0A2P6RYG51e-174A0A2P6RYG5_ROSCH; Putative transcription factor Hap2/NF-YA family
STRINGXP_004303671.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-49nuclear factor Y, subunit A3