PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000341.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 207aa MW: 23453.7 Da PI: 10.0033

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000341.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.4	5.4e-18	114	203	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k +++s+v+ ++ lp +f++++ + +++ t+tl de+g+++ + ++++ +++GW++F+ a++L +gD FANhyb_rscf00000341.1.g00004.1 114 FVKPMLQSHVTGGFWMGLPLSFCRKYL-P-KRDATVTLVDEQGEEYPTVY--LENKKG--FSGGWRGFAIAHELVDGDA 186 89**********************5.3.3678************..555555..89************* PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 +vF+l++ ++f +v ++r FANhyb_rscf00000341.1.g00004.1 187 LVFQLTRPTTF--KVYIIR 203 **9876666..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-25	108	204	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.1E-21	109	203	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.99E-28	112	203	No hit	No description
Pfam	PF02362	4.7E-17	114	203	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-25	114	205	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.576	114	205	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEENRKRMEA LNLPQLAQAA FRTSSSSPKP SPMKRQKPRK VEKQIVEVRR SARVASQPTP 60 VYREVEVKVA RSCGRVSKHR DLSNRVYADE HSRAEATEQA EAFESGLGSD YPTFVKPMLQ 120 SHVTGGFWMG LPLSFCRKYL PKRDATVTLV DEQGEEYPTV YLENKKGFSG GWRGFAIAHE 180 LVDGDALVFQ LTRPTTFKVY IIRVESS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011458940.1	1e-139	PREDICTED: B3 domain-containing protein At5g42700-like
Refseq	XP_011458941.1	1e-139	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q69V36	5e-72	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A2P6Q0E6	1e-132	A0A2P6Q0E6_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004291119.1	1e-120	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-63	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]