PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000347.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 843aa MW: 97107.9 Da PI: 7.8276

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000347.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.1	6.4e-28	133	227	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgk 75 fYn+YA+++ Fs+r+s s++s+r+g i++r fvC+keg+r ++++k + + +r+raetr+gCka+l+vk + +g FANhyb_rscf00000347.1.g00002.1 133 FYNSYARRIVFSTRVSMSRRSRRDGAIIQRSFVCTKEGFRMDKNDKrgnecDGRVKRPRAETRVGCKAMLVVKIQGSGG 211 9*************************************99998889999899999****************** PP FAR1 76 wevtkleleHnHelap 91 w+v+ +++eHnHel+p FANhyb_rscf00000347.1.g00002.1 212 WVVSCFVKEHNHELVP 227 ************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-25	133	227	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-31	348	440	IPR018289	MULE transposase domain
Pfam	PF04434	8.4E-10	616	662	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.522	628	664	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-6	639	666	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MMMEWMKTAL KLGILEALQP FWRALLPLAQ KGTLQGFTFP SQNYIFSSKA CKLCPFGKME 60 FEPLSLGNEV VEFDMIGLVD IDHHPVDDID IFDDSLAVVG SNSIGLPYII EGESNLEPYE 120 GMEFESEEAA KAFYNSYARR IVFSTRVSMS RRSRRDGAII QRSFVCTKEG FRMDKNDKRG 180 NECDGRVKRP RAETRVGCKA MLVVKIQGSG GWVVSCFVKE HNHELVPPDK VHCLRSHRHV 240 SGTAKSFIDT LQGAGIGPSG IMSALIKEYG DISKVGFTER DCRNYMRSSR QRTLGGDTQV 300 LLNYLKDRQV KDPAFFYAVQ GDQEQCMSNI FWADPKARSD YTYFGDTVTF DTTYRSNRYR 360 LPFAPFTGVN HHGQPVLFGC ALLINESEVS FLWLFKTWLM AMSGLPPVSI TTDHDRVIRL 420 AITQVFPETR HRFCKWHIFK ECQEKLSHVL SEHSTFEAEL HKCVNLTESI EEFESCWFSL 480 IEKYDLREDE WLQGIYADRR QWVPIYLRDT FFAEMSITQR SDTMNSYFDG YINASTTLQL 540 FVRQYEKALE SRYEKEMKAD YDTIKTAPIL KTPSPMEKQA GERYTRKLFM KFQEELVETL 600 TFLATKVEDE EAGYIYQVAK FGESHKAYFV RFDVHEMKAF CSCQMFEFSG LLCGHILTVF 660 RVTNVLTLPL HYILKRWTRN AKSDVILEEH VSNLLNRSQE SLTVRYNNLR HEALKYVDEG 720 VQTVEIYNVA IAALHEAANK VAHENKNGGR LVSLNKIGRD NDLHWGCQAN TNGDHKWGVE 780 TLSPISRVPY CDPLYYRGCW HRVSRCLFPR YRHCFFSGKR SSRPVGLLPP RGIAPSGFRP 840 LRS

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MMMEWMKTAL KLGILEALQP FWRALLPLAQ KGTLQGFTFP SQNYIFSSKA CKLCPFGKME  60
FEPLSLGNEV VEFDMIGLVD IDHHPVDDID IFDDSLAVVG SNSIGLPYII EGESNLEPYE  120
GMEFESEEAA KAFYNSYARR IVFSTRVSMS RRSRRDGAII QRSFVCTKEG FRMDKNDKRG  180
NECDGRVKRP RAETRVGCKA MLVVKIQGSG GWVVSCFVKE HNHELVPPDK VHCLRSHRHV  240
SGTAKSFIDT LQGAGIGPSG IMSALIKEYG DISKVGFTER DCRNYMRSSR QRTLGGDTQV  300
LLNYLKDRQV KDPAFFYAVQ GDQEQCMSNI FWADPKARSD YTYFGDTVTF DTTYRSNRYR  360
LPFAPFTGVN HHGQPVLFGC ALLINESEVS FLWLFKTWLM AMSGLPPVSI TTDHDRVIRL  420
AITQVFPETR HRFCKWHIFK ECQEKLSHVL SEHSTFEAEL HKCVNLTESI EEFESCWFSL  480
IEKYDLREDE WLQGIYADRR QWVPIYLRDT FFAEMSITQR SDTMNSYFDG YINASTTLQL  540
FVRQYEKALE SRYEKEMKAD YDTIKTAPIL KTPSPMEKQA GERYTRKLFM KFQEELVETL  600
TFLATKVEDE EAGYIYQVAK FGESHKAYFV RFDVHEMKAF CSCQMFEFSG LLCGHILTVF  660
RVTNVLTLPL HYILKRWTRN AKSDVILEEH VSNLLNRSQE SLTVRYNNLR HEALKYVDEG  720
VQTVEIYNVA IAALHEAANK VAHENKNGGR LVSLNKIGRD NDLHWGCQAN TNGDHKWGVE  780
TLSPISRVPY CDPLYYRGCW HRVSRCLFPR YRHCFFSGKR SSRPVGLLPP RGIAPSGFRP  840
LRS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289021.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P6RL45	0.0	A0A2P6RL45_ROSCH; Putative transcription factor FAR family
STRING	XP_004289021.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]