PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000353.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 370aa    MW: 42306.1 Da    PI: 6.3777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000353.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00055678323
                                    ET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                                    C+   Cgk+F +   L++H   H
  FANhyb_rscf00000353.1.g00006.1 56 CSyeGCGKTFIDAGALRKHSHIH 78
                                    77779**************7766 PP
2zf-C2H216.52.4e-0583107123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     y+C+   Cgk F ++s LkrH   H
  FANhyb_rscf00000353.1.g00006.1  83 YVCHyeGCGKKFLDSSKLKRHFLIH 107
                                     9********************8877 PP
3zf-C2H221.75.3e-07113137123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     ++Cp   Cgk Fs   nL++H++tH
  FANhyb_rscf00000353.1.g00006.1 113 FVCPheGCGKAFSLDFNLRSHMKTH 137
                                     89**********************9 PP
4zf-C2H217.51.1e-05143167123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     + Cp  dCgk++ + + Lk+Hi++H
  FANhyb_rscf00000353.1.g00006.1 143 HICPypDCGKRYAHEYKLKNHISSH 167
                                     679999******************6 PP
5zf-C2H213.80.00017230255123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     y Cp   C k + + + Lk H+r+ H
  FANhyb_rscf00000353.1.g00006.1 230 YACPyeGCEKAYIHEYKLKLHLRReH 255
                                     89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.1E-144980IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00325478IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7835483IPR007087Zinc finger, C2H2
PROSITE patternPS0002805678IPR007087Zinc finger, C2H2
SuperFamilySSF576673.79E-857107No hitNo description
Gene3DG3DSA:3.30.160.602.3E-1481103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002483107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.92183112IPR007087Zinc finger, C2H2
PROSITE patternPS00028085107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-1494147No hitNo description
Gene3DG3DSA:3.30.160.603.6E-20104139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695113142IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4113137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280115137IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-8140167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0045143167IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162143172IPR007087Zinc finger, C2H2
PROSITE patternPS000280145168IPR007087Zinc finger, C2H2
SuperFamilySSF576672.03E-5225253No hitNo description
Gene3DG3DSA:3.30.160.603.7E-9225253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0089230255IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972230260IPR007087Zinc finger, C2H2
PROSITE patternPS000280232255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGFAGCGSNW WKVLSFEMGY RYTDYQGTVK ALNEKSKELL APDPEPEPTT EVLFLCSYEG  60
CGKTFIDAGA LRKHSHIHGE RQYVCHYEGC GKKFLDSSKL KRHFLIHTGE RDFVCPHEGC  120
GKAFSLDFNL RSHMKTHSQE NYHICPYPDC GKRYAHEYKL KNHISSHHEK VAISSAPLPF  180
AYIDVYLYSI ILLNVPVDVP KYAVPPSEKQ TKTPKTPAGV YGSASSDRPY ACPYEGCEKA  240
YIHEYKLKLH LRREHPGHMS DENAEHAPNT VDNEMDETSD QDVYAVKRAN GKSQKTNRAK  300
PNLKFPPAKV RKGSTPYQAT TNTMKKPWPV KEVVYEEDSE ETEEDRDNVE DGWRYVGNND  360
DDDEETEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-35471672119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299900.10.0PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X1
SwissprotQ2V3L31e-124YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2P6PCW10.0A0A2P6PCW1_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004299900.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-125C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]