PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000355.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 340aa MW: 38761.3 Da PI: 6.5181

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000355.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.9	7.8e-57	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+++yL +kv ++ +++ ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat+ FANhyb_rscf00000355.1.g00002.1 16 LPPGFRFHPTDEELISHYLSPKVLDSAFTA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATE 93 79***********************999.89***********888999********************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +gyWkatgkdke+++ + lvg+kktLvfykgrapkgekt+Wvmheyrle FANhyb_rscf00000355.1.g00002.1 94 AGYWKATGKDKEIYK-AKVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 **********9.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.017	16	166	IPR003441	NAC domain
Pfam	PF02365	4.3E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MENVSAFINE DEQMELPPGF RFHPTDEELI SHYLSPKVLD SAFTARAIGE VDLNKCEPWD 60 LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK VLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKYSAYNL PKTAKNEWVI CRIFQKCSGG KKTHISGLVR 180 ESPYGNDQFR PSLLPPLMDS PPYNNSDTRT TTVGGETSHV SCFSDPMEDQ KTQDDIIDSF 240 NNNNNNDNMS SSNNSHLLVS SSSFPFNSSV QNSYFSNQIP PNTGNMQYPD SGFMQDQSIM 300 RLLTEPQAPI LKRNSSNYLG GQDVPSYSAA PMDFDSIWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-54	13	172	17	174	NAC domain-containing protein 19
3swm_B	8e-54	13	172	17	174	NAC domain-containing protein 19
3swm_C	8e-54	13	172	17	174	NAC domain-containing protein 19
3swm_D	8e-54	13	172	17	174	NAC domain-containing protein 19
3swp_A	8e-54	13	172	17	174	NAC domain-containing protein 19
3swp_B	8e-54	13	172	17	174	NAC domain-containing protein 19
3swp_C	8e-54	13	172	17	174	NAC domain-containing protein 19
3swp_D	8e-54	13	172	17	174	NAC domain-containing protein 19
4dul_A	6e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	6e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004304286.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2P6S4B4	0.0	A0A2P6S4B4_ROSCH; Putative transcription factor NAM family
TrEMBL	U5I025	0.0	U5I025_ROSHC; NAC domain protein 100
STRING	XP_004304286.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-115	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]