PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000357.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 245aa    MW: 27821.9 Da    PI: 10.3967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000357.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000613355123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    y+C  C++ Fs+   L  H+  H
  FANhyb_rscf00000357.1.g00005.1 33 YTCRLCSRAFSSTQALGGHQTAH 55
                                    9***************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-63260No hitNo description
Gene3DG3DSA:3.30.160.605.7E-43359IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.2373360IPR007087Zinc finger, C2H2
PfamPF139129.2E-73358IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTCAEILCNP NMGDPLIAAP MRRSIESFSF NLYTCRLCSR AFSSTQALGG HQTAHRKEKS  60
ERLIRLIRQA ELDELKYAAD NDVVLSPEPI SWAPPATDDQ TIKVYDFMPM GDGTSRVPGS  120
GSENKAYDVE KKKKQQKRKF MNLSGCSKVN TEASDADQKK QKKRKYSQKL SECPENKAAD  180
ADKTEKKRKY STKLSDCSEN KASELEQKKQ KKKTKSTKSS ECPEHKASNT EKKKKKKKKK  240
KKKKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231244KKKKKKKKKKKKKR
2234243KKKKKKKKKK
3236244KKKKKKKKR
4238244KKKKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465813.16e-31PREDICTED: nucleolar protein 58-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2622322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.15e-08C2H2 family protein