PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000363.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 233aa MW: 26324.6 Da PI: 8.7211

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000363.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.3	6.4e-49	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+e++++ ++PwdLp e+e yfFs++++ky++g+r+nr+t+ FANhyb_rscf00000363.1.g00004.1 14 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPEINVCVYDPWDLPGD---LEHERYFFSNKESKYPNGNRTNRVTS 88 79**************************.89***********54...46799***************** PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk+++s+ +++ vg kk+Lvfy+g+ap+g+ktdW+mhey+l FANhyb_rscf00000363.1.g00004.1 89 SGYWKATGSDKKIVSArRNNIVGKKKSLVFYRGKAPNGSKTDWLMHEYSL 138 **********9867778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-58	8	167	IPR003441	NAC domain
PROSITE profile	PS51005	55.084	14	167	IPR003441	NAC domain
Pfam	PF02365	6.1E-25	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDKFNFVRNG MTRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPEIN VCVYDPWDLP 60 GDLEHERYFF SNKESKYPNG NRTNRVTSSG YWKATGSDKK IVSARRNNIV GKKKSLVFYR 120 GKAPNGSKTD WLMHEYSLVN NLGTRALSTE NSINQQGNWV LCRIFLKKRS SHKDEDNLLN 180 YDGFKVNNAE KGQLQITRTT PVSSCSSCSS CSGITEVSSS HEAGDEEISG CAH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-48	14	173	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-48	14	173	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-48	14	173	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-48	14	173	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-48	14	173	17	171	NAC domain-containing protein 19
4dul_B	9e-48	14	173	17	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297508.1	1e-174	PREDICTED: NAC transcription factor 29
Swissprot	Q9FY93	2e-78	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2P6P4P6	1e-145	A0A2P6P4P6_ROSCH; Putative transcription factor NAM family
STRING	XP_004297508.1	1e-174	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-80	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]