PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000387.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 654aa    MW: 72061.8 Da    PI: 5.8755
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000387.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-094064431954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  FANhyb_rscf00000387.1.g00003.1 406 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 443
                                     664459******************************88 PP
2BELL127.64.6e-41268339172
                            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                     e+qelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag g+akpYt++Al++iSrhFrcL+dai++qi
  FANhyb_rscf00000387.1.g00003.1 268 EKQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGSGAAKPYTAVALQTISRHFRCLRDAITGQI 339
                                     689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-62186337IPR006563POX domain
PfamPF075263.1E-51192336IPR006563POX domain
PROSITE profilePS5007112.163384447IPR001356Homeobox domain
CDDcd000865.42E-13387448No hitNo description
SMARTSM003891.0E-9387451IPR001356Homeobox domain
SuperFamilySSF466892.44E-17388454IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-29390453IPR009057Homeodomain-like
PfamPF059204.4E-18404443IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MLYSREPLTS SYPETPVLPG NMMMYMNLGS YSDALAGSSQ QQNNCIEVVS SVGASDSNTQ  60
QQDVLSHLGG SRIGEQGFNA WRDSRNEMLV TNPMDGSAAI LHGGQNLQGQ GLSLSLSSGM  120
QVPSMSYRNP NMGFASFLSP NPSLSSEGRN GSFRDDQPRN VEYLQPSFPG GNADSSKGDL  180
SPYGMSSIAR NIPNSKYLKA AQQLLDEVVN VQKALKQHDR EKNESANEHT MKSFKDGDDR  240
SKNELESGES SNPQESASNS PCELSHAEKQ ELQNKLTKLL SMLDEVDRRY KQYYHQMQIV  300
VSSFDVIAGS GAAKPYTAVA LQTISRHFRC LRDAITGQIR ATQKSLGEQG TSGSIKGVGI  360
TRLRYVDQQL RQQRALQQLG MMQQHAWRPQ RGLPESSVSI LRAWLFEHFL HPYPKDSDKI  420
MLARQTGLTR SQVSNWFINA RVRLWKPMVE EMYKEEAGDA EMDSNSSSEN AAQTKKGEKR  480
TLEDGGEDMQ PSASSTGTDR CSTGQFMDSK SEHYDVEIAG STGSVSFQNG TRREGEAEFG  540
LVKLRQGERP GMDESSFFSD GMIQSDRSSE RFMPAYHMPE LGRFGSGSGV SLTLGLQHCE  600
GGNIPISSGT PHSFVAMRDD DLYNAAASSV GTETADFDQQ HRFGPSHLLR DFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16393450158Homeobox protein Meis1
4xrs_B1e-16393450158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289652.10.0PREDICTED: BEL1-like homeodomain protein 6
TrEMBLA0A2P6PPN20.0A0A2P6PPN2_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004289652.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-128BEL1-like homeodomain 6