PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000390.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 511aa MW: 55768.7 Da PI: 7.1771

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000390.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.1e-05	373	410	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L FANhyb_rscf00000390.1.g00003.1 373 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 410 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.074	361	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.78E-6	371	414	No hit	No description
SuperFamily	SSF47459	2.36E-11	371	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-8	375	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MAEEYQGGIC GGNWWSTASR HALVAAASPC SVGFNDHMGS FGCPNDMDMI KSSRSTCGGE 60 ININSSDVVS VRTDHDQDHD VRNPHENSDI SATTDRSTLQ MIGFGLSSLS STVPSDLNQA 120 LLLRSSSGRG ESNFHNSMLP EDMGSFKQPM NNQDFSLDQS SSSSGFPITS SSANNSYGSG 180 GFPPQLLQNL YDPEEVVVPQ PQLQSLFNNG SSSMSYSSAE NYGTLSSNAL LSSPASTTTC 240 WPRYSPSCLR PSLQPTQQQQ QPGGGSGGGL QFSNINTPFW NAPAAALNHD IRSTGLFPSL 300 SQSQYTAPTA AAYDEHKPIT SSNFTKANTN EDVQDSSSST VKKSGSSFCS STEPVFKRAR 360 IETPSPLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIDYIKFL HDQVGVLSTP 420 YMNNGAPMQH QQRNKEENKI YKAEDCAWFQ FQVHFRLLMR PRPTFGLRHL EQRLSGDPSQ 480 VIKKRRAGGA NSIKNQFKFS TKELLHVLNR C

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MAEEYQGGIC GGNWWSTASR HALVAAASPC SVGFNDHMGS FGCPNDMDMI KSSRSTCGGE  60
ININSSDVVS VRTDHDQDHD VRNPHENSDI SATTDRSTLQ MIGFGLSSLS STVPSDLNQA  120
LLLRSSSGRG ESNFHNSMLP EDMGSFKQPM NNQDFSLDQS SSSSGFPITS SSANNSYGSG  180
GFPPQLLQNL YDPEEVVVPQ PQLQSLFNNG SSSMSYSSAE NYGTLSSNAL LSSPASTTTC  240
WPRYSPSCLR PSLQPTQQQQ QPGGGSGGGL QFSNINTPFW NAPAAALNHD IRSTGLFPSL  300
SQSQYTAPTA AAYDEHKPIT SSNFTKANTN EDVQDSSSST VKKSGSSFCS STEPVFKRAR  360
IETPSPLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIDYIKFL HDQVGVLSTP  420
YMNNGAPMQH QQRNKEENKI YKAEDCAWFQ FQVHFRLLMR PRPTFGLRHL EQRLSGDPSQ  480
VIKKRRAGGA NSIKNQFKFS TKELLHVLNR C

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460359.1	0.0	PREDICTED: transcription factor bHLH112 isoform X1
TrEMBL	A0A2P6Q371	0.0	A0A2P6Q371_ROSCH; Putative transcription factor bHLH family
STRING	XP_004293560.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.2	4e-32	bHLH family protein