PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000397.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 394aa    MW: 44469 Da    PI: 7.1102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000397.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12161207455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  FANhyb_rscf00000397.1.g00002.1 161 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYVKQLQ 207
                                     58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-12162208No hitNo description
SuperFamilySSF474592.36E-16162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-10162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEDPTFLNQY EMNFHLDYSL EDLNFRSLSA ESYSSYPDFT PPQNDVDERP AKQPKNNHSN  60
WNSCTTTHDH KITVPRASSS ASSHLISFDN SNSSAYGSLD CTTTVKPKNE VQGSGGNLNS  120
IPTLISQGNS YDPQTCSPNR AYGQGIKRAA TVTRSPLHAQ DHVLAERKRR EKLSQRFIAL  180
SALVPGLKKM DKASVLGDAI KYVKQLQERM KILEEQAAKK TVESVVFVKR TQYSAEDDNS  240
SSDENFDSCS DQPLPEIEAR VSDKEVLIRI HCEKKKGCLA NILDEIERLN LTILNSSFLP  300
FGNSTLDITV VSQMDVEYSM TVKELVRSKA LYTYISLMHE RREHYSSSRA VYCHGWFFAA  360
RLRICWRRVF PVIFCVVDHV QLPSSDDKAA GFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-13161216863Transcription factor MYC2
5gnj_B4e-13161216863Transcription factor MYC2
5gnj_E4e-13161216863Transcription factor MYC2
5gnj_F4e-13161216863Transcription factor MYC2
5gnj_G4e-13161216863Transcription factor MYC2
5gnj_I4e-13161216863Transcription factor MYC2
5gnj_M4e-13161216863Transcription factor MYC2
5gnj_N4e-13161216863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRE
2166171RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466489.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_011466492.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2P6RPH50.0A0A2P6RPH5_ROSCH; Putative transcription factor bHLH family
STRINGEMJ075501e-149(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.18e-58bHLH family protein