PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000399.1.g00012.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 420aa MW: 47401.3 Da PI: 6.5072

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000399.1.g00012.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.9	4.2e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk FANhyb_rscf00000399.1.g00012.1 9 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-29	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-22	1	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.941	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00120	6.70E-24	2	54	No hit	No description
PRINTS	PR00404	4.2E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIVLLMFSP TGKPSLCSGK 60 RRNRMSATII SNFALSVVVV FSSIEEVIAK FSQLTPQERA KRKLESLEAL KKTFRKLDHD 120 VNIQEFLGTS SQTVEDLSNR SRLLQTQISE IEKRLSCWTN PDKVNSVDQL GQMEDSIREL 180 LNQIRTHKLV LDLVILVLSI FLLQENLQKQ QLMSLECTSQ FQNGLHIPFS MSTEQQLQPM 240 PWIPSNENWH IVLPEDPTLL PHRDMECSAS SSFGSYSGYL GTGKSPEISN SGQENGILNE 300 LSRTAPLRLQ LGGQFSSYLP YNLNMLTDTK FQQPAEMSPQ ENPVEYHVNG SFEAPRPDFF 360 ATQHSWASTS GPCAVTMFDE HLFSQLCDCV NLLLCVAEVA ICWHGSVSLP VLEYDYNVIV

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIVLLMFSP TGKPSLCSGK  60
RRNRMSATII SNFALSVVVV FSSIEEVIAK FSQLTPQERA KRKLESLEAL KKTFRKLDHD  120
VNIQEFLGTS SQTVEDLSNR SRLLQTQISE IEKRLSCWTN PDKVNSVDQL GQMEDSIREL  180
LNQIRTHKLV LDLVILVLSI FLLQENLQKQ QLMSLECTSQ FQNGLHIPFS MSTEQQLQPM  240
PWIPSNENWH IVLPEDPTLL PHRDMECSAS SSFGSYSGYL GTGKSPEISN SGQENGILNE  300
LSRTAPLRLQ LGGQFSSYLP YNLNMLTDTK FQQPAEMSPQ ENPVEYHVNG SFEAPRPDFF  360
ATQHSWASTS GPCAVTMFDE HLFSQLCDCV NLLLCVAEVA ICWHGSVSLP VLEYDYNVIV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011463058.1	0.0	PREDICTED: MADS-box transcription factor 25 isoform X1
Refseq	XP_011463059.1	0.0	PREDICTED: MADS-box transcription factor 25 isoform X1
Refseq	XP_011463060.1	0.0	PREDICTED: MADS-box transcription factor 25 isoform X1
Swissprot	Q1PFA4	1e-116	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2P6R2U7	0.0	A0A2P6R2U7_ROSCH; Putative transcription factor MADS-type1 family
STRING	XP_004298422.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-100	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]