PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000410.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 220aa MW: 24864 Da PI: 8.8004

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000410.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	26	48	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H+++H FANhyb_rscf00000410.1.g00005.1 26 FTCSFCKREFRSAQALGGHMNVH 48 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.12E-6	23	52	No hit	No description
PROSITE profile	PS50157	11.053	26	53	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-6	26	49	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0067	26	48	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MMDCVKLRFG REEDLSDISP WTPKNFTCSF CKREFRSAQA LGGHMNVHRR DRARLRLLPP 60 NSVLSSSEYS SYPNPNPNPN PKSYFSSSPS SSSSLSGANK YLPHLVSPRS TYVSTPSSGT 120 LDHENKKLMI FNSGSHQHHA PPFLHPKTGL KRSSALDYEF GDQLKGFAGF AQKHHLDDDF 180 EVVKKDEKHI NMIREDLDMG LLIKDPNKVE VDLELRLGHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-11	21	48	2	29	superman protein
2l1o_A	2e-11	21	48	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011457986.1	1e-128	PREDICTED: transcriptional regulator SUPERMAN
TrEMBL	D5LGG9	1e-123	D5LGG9_FRAVR; Superman-like protein FRASUP1
STRING	EMJ02129	4e-35	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16963	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42410.1	2e-14	zinc finger protein 11