PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000416.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 439aa    MW: 49679.1 Da    PI: 4.7649
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000416.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.2e-36141042101
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y++++d+++++++swse+g sfvv+d++efak++Lp yFkh+nf+SFvRQLn+YgF+kv+ e+         we
  FANhyb_rscf00000416.1.g00010.1  14 FLSKTYDLVDDPSTNHVVSWSESGGSFVVWDPTEFAKDLLPMYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WE 83 
                                     9***************************************************************9998.........** PP

                                     EEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkk 101
                                     F++++F +g ++ll++i+r+k
  FANhyb_rscf00000416.1.g00010.1  84 FANEEFLRGGRHLLKNIHRRK 104
                                     *******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.8E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.28E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.2E-3911103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.6E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDGSQGGSNA PAPFLSKTYD LVDDPSTNHV VSWSESGGSF VVWDPTEFAK DLLPMYFKHN  60
NFSSFVRQLN TYGFRKVDPE QWEFANEEFL RGGRHLLKNI HRRKPIHSHS MQNHEYSSVP  120
LSETEREEYE KKINRLNNDK NLLELELQRH QRENQEFEFQ MKLLNEQLQK MELRQRQYTT  180
FLAQVLQKPG FASLLMQQSE NHNKKRRLLK PNLFPDDFSM EGLNLNSQKE NLDSVSTSTS  240
KSERLEKMES SLNFWEDFIR GIGEAMPEEV NDIGPMSEAS PIIVSEIQDL GMNSRPCSPI  300
SNLSSPTSMN VHSSPEVAGS ANLFDILAIS SMYQSGDFRP KSSGLDMNSK PDSAPAVEAP  360
KERAVEMTAA EPAAANDVFW EQCLTETPGL EDAQEVQSAR RDGDGGASDT NTAAQKKLWW  420
NTDNVDNFTN QIGRLTPAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-27310319129Heat shock factor protein 1
5d5v_B4e-27310319129Heat shock factor protein 1
5d5v_D4e-27310319129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303209.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLA0A1W6LWG10.0A0A1W6LWG1_FRAAN; Heat shock transcription factor protein 3
STRINGXP_004303209.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-85HSF family protein