PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000421.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 243aa    MW: 27788.9 Da    PI: 10.1885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000421.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-1815103193
                                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                     ffkv +p +++++  l++p +f+e ++++  ++ tl  ++ s  sW+v +  +k+ +++++++GW+eF k+n +++gDf
  FANhyb_rscf00000421.1.g00008.1  15 FFKVIIPGYSTRH--LRIPPPFLELISNDLSGEATLNSNTCSEWSWNVGV--TKTTRSVYFKDGWQEFLKDNSVEDGDF 89 
                                     8899977777766..9*******999766444444555555556777777..*************************** PP

                                     EEEEE-SSSEE..E CS
                              B3  80 vvFkldgrsefelv 93 
                                     vvF+++g+++f+l+
  FANhyb_rscf00000421.1.g00008.1  90 VVFEYEGNMNFNLN 103
                                     *******9999765 PP
2B341.23e-131622411497
                                     T-EE--HHH.HTT---..--SEEEEEE.TTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                              B3  14 grlvlpkkfaeehggkkeesktltled.esgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                     +  ++p +f +eh ++  ++ ++++    +g++W +vkl   ++  + +++kGW++F++an++k+g ++ F+++  +e 
  FANhyb_rscf00000421.1.g00008.1 162 CVYSFPTSFYKEHLSP--GNYEVVFLKiAEGKKWyKVKL--VRSIATAFMSKGWSKFARANQIKVGNVCAFEVV--EEN 234
                                     56689********433..445566555599999967899..88888899***********************65..567 PP

                                     ..EEEEE CS
                              B3  91 elvvkvf 97 
                                     +lvv+++
  FANhyb_rscf00000421.1.g00008.1 235 KLVVHII 241
                                     7799987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-209103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-229106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.40713108IPR003340B3 DNA binding domain
CDDcd100171.80E-1413100No hitNo description
PfamPF023622.7E-1615103IPR003340B3 DNA binding domain
SMARTSM010192.9E-1215108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-15145242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-15146241IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0015154243IPR003340B3 DNA binding domain
PfamPF023624.2E-11164241IPR003340B3 DNA binding domain
CDDcd100177.38E-11165241No hitNo description
PROSITE profilePS5086311.039166243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKPKNGIKG KRPSFFKVII PGYSTRHLRI PPPFLELISN DLSGEATLNS NTCSEWSWNV  60
GVTKTTRSVY FKDGWQEFLK DNSVEDGDFV VFEYEGNMNF NLNSRKDSSD NIAKQRLPGR  120
PRKSHIGCSK RHPCPSNFRK VSAESFKSNY PHVTLAIKKT YCVYSFPTSF YKEHLSPGNY  180
EVVFLKIAEG KKWYKVKLVR SIATAFMSKG WSKFARANQI KVGNVCAFEV VEENKLVVHI  240
IQD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290392.11e-168PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_011458369.11e-168PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_011458370.11e-168PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_011458371.11e-168PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A2P6PMZ71e-127A0A2P6PMZ7_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290392.11e-168(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-17B3 family protein