PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000421.1.g00009.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 307aa    MW: 35487.8 Da    PI: 10.2883
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000421.1.g00009.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.2e-182801899
                                    --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                              B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                                    +p +f+++h  +k+ +  tl+l+++s  sW+v++  rk++g ++l++GW+eF ++  L +++f+vF ++g+++f  +vkvf
  FANhyb_rscf00000421.1.g00009.1  2 IPPRFIRKHiVNKPSKRATLKLKQSSQFSWNVEV--RKSGGDVYLKDGWQEFLRDACLGDKEFLVFVYNGNMSF--NVKVF 78
                                    9********966777889****************..**************************************..***** PP

                                    -S CS
                              B3 98 rk 99
                                    +k
  FANhyb_rscf00000421.1.g00009.1 79 DK 80
                                    98 PP
2B335.81.5e-11218305697
                                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                      +s  lk++++++ k +  e+ +++ +   + l++++g +W +vkl  + ++++ +ltkGW  F+ an++k+g  + F+
  FANhyb_rscf00000421.1.g00009.1 218 FTSKILKLSQVYVCKAYYVENLSPP-NYDFIFLKNSEGTKWyKVKL--SCYRDQAFLTKGWGAFAVANQVKVGSLCQFQ 293
                                     6788888999999999999995554.4458999**99988867999..8999999************************ PP

                                     E-SSSEE..EEEEE CS
                              B3  84 ldgrsefelvvkvf 97 
                                     + +  e + vv ++
  FANhyb_rscf00000421.1.g00009.1 294 FLK--ENKIVVLIL 305
                                     765..444567665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.43E-17183IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.352181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18183IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-4181IPR003340B3 DNA binding domain
CDDcd100174.35E-13179No hitNo description
PfamPF023624.4E-16281IPR003340B3 DNA binding domain
PRINTSPR009301.9E-5102114IPR000116High mobility group protein HMGA
PRINTSPR009294.2E-6102113IPR017956AT hook, DNA-binding motif
SMARTSM003841.6104116IPR017956AT hook, DNA-binding motif
PRINTSPR009301.9E-5153172IPR000116High mobility group protein HMGA
PRINTSPR009294.2E-6162172IPR017956AT hook, DNA-binding motif
SMARTSM003842.5164176IPR017956AT hook, DNA-binding motif
SuperFamilySSF1019361.28E-11216306IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-9218304IPR003340B3 DNA binding domain
SMARTSM010190.0052219307IPR003340B3 DNA binding domain
CDDcd100171.02E-7220306No hitNo description
Gene3DG3DSA:2.40.330.104.6E-12220306IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.742247307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000785Cellular Componentchromatin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
RIPPRFIRKH IVNKPSKRAT LKLKQSSQFS WNVEVRKSGG DVYLKDGWQE FLRDACLGDK  60
EFLVFVYNGN MSFNVKVFDK NGCERMDFPN IKTHQNPNST RSTKRPRGRP RKSSISNTAD  120
MLKEVNEEEV DYSNNTEKST SNSTEMPHAR GLLLTNKKLT ESTKRPRGRP IKYPVTLKDS  180
AAGKRILISE FDVLKEVKEE KEDSQEYGVL FKSKLQYFTS KILKLSQVYV CKAYYVENLS  240
PPNYDFIFLK NSEGTKWYKV KLSCYRDQAF LTKGWGAFAV ANQVKVGSLC QFQFLKENKI  300
VVLILNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111KRPRGRPRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290391.11e-176PREDICTED: B3 domain-containing protein At5g18000-like isoform X3
TrEMBLA0A2P6PN111e-150A0A2P6PN11_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290391.11e-175(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3410222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.12e-12B3 family protein