PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000425.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23440.9 Da    PI: 9.4003
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000425.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-181353343
                                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                    i+n++ r+vtf kR++g+lKKA+EL +LCd++ +vii+ s+
  FANhyb_rscf00000425.1.g00004.1 13 IQNERSRKVTFRKRKTGLLKKAYELNTLCDVKGCVIIYESN 53
                                    99***********************************9764 PP
2K-box14.51.5e-06931471168
                           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 
                                     ++k e+lq++ +kL++++++Lq        + ++ Lsl +L +L q++++ ++ +R  
  FANhyb_rscf00000425.1.g00004.1  93 AEKIEQLQTKTRKLRRKNDELQFP---TCDDRMNALSLDQLLSLAQKVDHKIEAVRRS 147
                                     678999****************65...57899***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-11162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.946354IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-10525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-19786IPR002100Transcription factor, MADS-box
CDDcd001202.19E-171250No hitNo description
PfamPF003197.4E-191355IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-102540IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-104061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVRSNSRLSW DLIQNERSRK VTFRKRKTGL LKKAYELNTL CDVKGCVIIY ESNSDGQLLQ  60
PEIYPKHEEV KQIINKYASC SSKRVHNLED FYAEKIEQLQ TKTRKLRRKN DELQFPTCDD  120
RMNALSLDQL LSLAQKVDHK IEAVRRSMQC AINHEGRLGP MPMYHNGRAL PEADPVVRVE  180
VKGLDMGDWR EAVEGAQWLG QK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KLRRKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292021.11e-121PREDICTED: MADS-box transcription factor PHERES 2-like
TrEMBLA0A2P6S6E52e-47A0A2P6S6E5_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004292021.11e-121(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2623022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-16AGAMOUS-like 87