PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000429.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 368aa    MW: 41533.2 Da    PI: 7.6601
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000429.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1743.2e-2372156291
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                     fY++YA++vGF+vrk +++++ ++ge+ kr+++Cs++g+ +++++     +++r+e r gCka+l++++++++k++vtk
  FANhyb_rscf00000429.1.g00003.1  72 FYCSYARSVGFKVRKLRQNQN-KHGEVWKREYCCSCQGFYTKKRSP----QKKREERRFGCKAMLEIRLNQSKKYVVTK 145
                                     9****************9998.7778**************998877....899999*********************** PP

                            FAR1  81 leleHnHelap 91 
                                     +e eH+H+lap
  FANhyb_rscf00000429.1.g00003.1 146 FEAEHTHSLAP 156
                                     ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1972156IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MENQVDEFRA NSNDTEEAID HVNIGSDSED VHIAEDTEQT GGDTNMTKRP VVLYGEPEVG  60
MTFDNDEDVY HFYCSYARSV GFKVRKLRQN QNKHGEVWKR EYCCSCQGFY TKKRSPQKKR  120
EERRFGCKAM LEIRLNQSKK YVVTKFEAEH THSLAPASST HVLYNRDSSP MAQFGELCQI  180
AHRITSEGAK NRHSYTFVKS ELLKLEERLK ALQHTGQEHA EPETQKSKGR EKGKMKHLKS  240
KDSKNEVSSE RKDSQEPNTN AHEMTGPSNL SENVQGSTGV GKEKELIRSS LCLGGQFPGG  300
FPTVSGGQAL PYHHLPGHQF ILPRIPNPSF MYSQEIQSSL SRPQGPARQL RPGAVGRDGE  360
LDMISNTE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303235.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
STRINGXP_004303235.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2218223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-18FAR1 family protein