PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000434.1.g00006.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 257aa MW: 29297.6 Da PI: 9.1428

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000434.1.g00006.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94	1.8e-29	36	123	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vk+ek+gkw vt+ FANhyb_rscf00000434.1.g00006.1 36 FYDAYATQLGFIMRVDAFRRSLRDGKVVWRRLVCNKEGFRKTRPKR-SESRKPRAITREGCKAMIVVKREKSGKWIVTR 113 9*****************************************99.9*************************** PP FAR1 81 leleHnHela 90 + +eHnH+l+ FANhyb_rscf00000434.1.g00006.1 114 FIKEHNHSLV 123 *****996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-28	36	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MIESSNGQEA AAFEGSSDME PYVGMEFETE EAAKVFYDAY ATQLGFIMRV DAFRRSLRDG 60 KVVWRRLVCN KEGFRKTRPK RSESRKPRAI TREGCKAMIV VKREKSGKWI VTRFIKEHNH 120 SLVVTPANGR RTVLLSQTPI CCILQPVRDL VLLQVGNLVL LMYLTSYSLG SGSVDGTVDP 180 LAPSLDSRKS TLVDNDEKDM KIRELTAELQ RERKRSAAYQ EQLDMVLREM EEHSNHLSRN 240 IDDIVQSVKE IESKRVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913235.1	1e-123	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2H5PH26	1e-115	A0A2H5PH26_CITUN; Uncharacterized protein
STRING	Gorai.N002600.1	1e-113	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-61	FAR1 family protein