PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000454.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 1147aa MW: 123472 Da PI: 4.0796

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000454.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg +F++++ rH r H FANhyb_rscf00000454.1.g00003.1 20 HVCRKCGWPFPNSHPNARHRRAH 42 79*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1147 aa Download sequence Send to blast
MDHQDLRRAH SSGQEGHGVH VCRKCGWPFP NSHPNARHRR AHKKICGSIE GYKLVGSAQL 60 SVSDDDQHSD DDPKTPSPKV VEKSVYEKDS GGIGQGSIQS DDGVFSDAVA EFSDSSSAAR 120 TGVGFEDAPE SLPDVERGAK KDLSAIPFPN DGETTGVNLN SINYETVTYT SEDMKKTNVT 180 NSMIDSCLTS VDQEAEVTGI TATNLDRNVS SQTSSMSDTK TEESNVLGDT NGLHPIKYDM 240 VTDASEIIEK TGDTDSMIES CLTSVDQDAE VALSLKESSE MTSEYVRDDE VVPSEKEHSD 300 GFDMQFPQID VPPEVESVAQ VNTSIDTIEK KVNNTDGIQY LSSGKVIESH NGKDEENASV 360 HVLSVPDDLH VVEDPVLMLE DFKDHKGKQL DRFTSCSDSW EQFDDEENNV KQPVFNENLN 420 ILQSSHLSGG TVVSPDMHNL EASLEPDDSS SNPMVKIVPD EGEANMTLSE IKMFKNQTSD 480 EIGAPADAVM ALTANTYVVD SPEGQESYDK SNESLQVNFA ASDASIDQTT QSVGLDDNQK 540 DGICDGSGES GEDSKKGPGE ENLVANSIAT VQSADCYENQ IHPAANLQKD DDAGDYEKGV 600 TEKCNKFGDA DYNEKAENFN LCGDDTSKGA AEKSSRDPAS NLETVSCLSE LQVNPVTIPH 660 EGGDAADDCE NDKTEKCDLI GYDGNLEKAE RCASSGEDLS KICTDKTSAE DPTTNLESVI 720 ALSDSQVHPA KKLPDVDGSA FHDDSEVEKF VIPGNESMAG SVEENILVKS EFTPESSVIL 780 AKAIVEDATD GSTMELVETS SRDLDISSNS CQIAGKILSD TQQDVIENEI ACSDKIEKEV 840 DGGVAAGSDH GQNVVPFQKS LDDHGMKEPG FSALDTESSV LSFIASEDSG SQEVPAVASG 900 ITSQSLLKEG DDNLLRQQPS PTTIDMDSNS QTDSLDANWG SFSVLSMQSD TVTDAEVVPH 960 TNSQASLEEN SDLKKSKVEC ESPYSDKSSD MFEAPSFMTL VEPRGVDDKK ATGSETLTAV 1020 QNPEQPKPAS LQTGWFPSMT HVVNESQGRK KNEEIIAKVT NWSTGKQHTP LKSLLGEASS 1080 ESKGKSLNQK ESLAPAPQKD DKAVKISVPV TTTGVSDIIL QNPRVRWNVG SVHLQQFGDE 1140 LDATKFC

Sequence ? help Back to Top

Protein Sequence Length: 1147 aa Download sequence Send to blast

MDHQDLRRAH SSGQEGHGVH VCRKCGWPFP NSHPNARHRR AHKKICGSIE GYKLVGSAQL  60
SVSDDDQHSD DDPKTPSPKV VEKSVYEKDS GGIGQGSIQS DDGVFSDAVA EFSDSSSAAR  120
TGVGFEDAPE SLPDVERGAK KDLSAIPFPN DGETTGVNLN SINYETVTYT SEDMKKTNVT  180
NSMIDSCLTS VDQEAEVTGI TATNLDRNVS SQTSSMSDTK TEESNVLGDT NGLHPIKYDM  240
VTDASEIIEK TGDTDSMIES CLTSVDQDAE VALSLKESSE MTSEYVRDDE VVPSEKEHSD  300
GFDMQFPQID VPPEVESVAQ VNTSIDTIEK KVNNTDGIQY LSSGKVIESH NGKDEENASV  360
HVLSVPDDLH VVEDPVLMLE DFKDHKGKQL DRFTSCSDSW EQFDDEENNV KQPVFNENLN  420
ILQSSHLSGG TVVSPDMHNL EASLEPDDSS SNPMVKIVPD EGEANMTLSE IKMFKNQTSD  480
EIGAPADAVM ALTANTYVVD SPEGQESYDK SNESLQVNFA ASDASIDQTT QSVGLDDNQK  540
DGICDGSGES GEDSKKGPGE ENLVANSIAT VQSADCYENQ IHPAANLQKD DDAGDYEKGV  600
TEKCNKFGDA DYNEKAENFN LCGDDTSKGA AEKSSRDPAS NLETVSCLSE LQVNPVTIPH  660
EGGDAADDCE NDKTEKCDLI GYDGNLEKAE RCASSGEDLS KICTDKTSAE DPTTNLESVI  720
ALSDSQVHPA KKLPDVDGSA FHDDSEVEKF VIPGNESMAG SVEENILVKS EFTPESSVIL  780
AKAIVEDATD GSTMELVETS SRDLDISSNS CQIAGKILSD TQQDVIENEI ACSDKIEKEV  840
DGGVAAGSDH GQNVVPFQKS LDDHGMKEPG FSALDTESSV LSFIASEDSG SQEVPAVASG  900
ITSQSLLKEG DDNLLRQQPS PTTIDMDSNS QTDSLDANWG SFSVLSMQSD TVTDAEVVPH  960
TNSQASLEEN SDLKKSKVEC ESPYSDKSSD MFEAPSFMTL VEPRGVDDKK ATGSETLTAV  1020
QNPEQPKPAS LQTGWFPSMT HVVNESQGRK KNEEIIAKVT NWSTGKQHTP LKSLLGEASS  1080
ESKGKSLNQK ESLAPAPQKD DKAVKISVPV TTTGVSDIIL QNPRVRWNVG SVHLQQFGDE  1140
LDATKFC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298230.1	0.0	PREDICTED: uncharacterized protein LOC101308865
TrEMBL	A0A2P6QVX1	0.0	A0A2P6QVX1_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004298230.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19