PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000458.1.g00008.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 629aa MW: 69694.3 Da PI: 5.4229

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000458.1.g00008.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	408.2	7.5e-125	244	613	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 +lL +c ea+ ++ +++++++a+l elasp+g+++ Rl+ay+teALa r++r +++++++ pp+e + + +e+ +a FANhyb_rscf00000458.1.g00008.1 244 LSLLNACIEAIGMKNIAAINHFIAKLGELASPKGSAISRLTAYYTEALALRVTRLWPHVFQISPPREFD-RGDDESGTA 321 689**************************************************************98.567888899 PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159 ++l+++vsPi+kf h+t N+ +l+a+eg++rvHiiDfdi+ GlQWp+L+q+LasR+++p ++RiTgvg+ sk+el+ FANhyb_rscf00000458.1.g00008.1 322 MRLLNQVSPIPKFLHFTSNEILLRAFEGKDRVHIIDFDIKLGLQWPSLFQSLASRTNPPSHVRITGVGE----SKQELN 396 *****************************************************************....** PP GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 etg+rLa fA +l++pfef++ v++rled++l++L+vk++E++aVn+++qlh++l +++ + +++L l++s++P++ FANhyb_rscf00000458.1.g00008.1 397 ETGDRLAGFAGALNLPFEFHP-VVDRLEDVRLWMLHVKEQESVAVNCAFQLHKTLYDTTGGAF--RDFLGLIRSTNPTI 472 *****************.7****************************77766665..89******** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 v ++eqea+hn++++ +r++++l+yysa+fd + ++lp +s +rikvE ++rei+n+vaceg++r erhe +ekWr+ FANhyb_rscf00000458.1.g00008.1 473 VLMAEQEAEHNEPRLEARVSNSLRYYSAIFDLIGSSLPLDSPARIKVEDT-VAREIRNIVACEGSDRLERHEGFEKWRM 550 *********************************************9.9*********************** PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374 +e+ GF+ +++++ q + ll++++ + y+v+++ ++l+l W+d+pL++vSaW+ FANhyb_rscf00000458.1.g00008.1 551 LMEQGGFRCNGITDREFLQSQFLLKMYECENYSVKKQgqrhegAAALTLSWMDQPLYTVSAWT 613 ************************9996666665577888************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.315	217	587	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-122	244	613	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRTE AAAQLQACHF QLPSMSTQRL DLPCSFPRKD SSRSQPIRPV 60 GLSVEKTSID SKTSTCSLKQ SIRLPPLATS RPAATIQAEV KDQFWEKRGK GLKRFAEVDD 120 EEGEDESIRN RPGFHVPRSV QAITGIDPPQ FPYTFPNNPW LQSVVTEITD LKDGETSHAP 180 VGEPSGDSST SSGNQSLGLR VNESVSEPEG GVGSGHGHNP YGDAGVEAED EEESEVEQQG 240 FELLSLLNAC IEAIGMKNIA AINHFIAKLG ELASPKGSAI SRLTAYYTEA LALRVTRLWP 300 HVFQISPPRE FDRGDDESGT AMRLLNQVSP IPKFLHFTSN EILLRAFEGK DRVHIIDFDI 360 KLGLQWPSLF QSLASRTNPP SHVRITGVGE SKQELNETGD RLAGFAGALN LPFEFHPVVD 420 RLEDVRLWML HVKEQESVAV NCAFQLHKTL YDTTGGAFRD FLGLIRSTNP TIVLMAEQEA 480 EHNEPRLEAR VSNSLRYYSA IFDLIGSSLP LDSPARIKVE DTVAREIRNI VACEGSDRLE 540 RHEGFEKWRM LMEQGGFRCN GITDREFLQS QFLLKMYECE NYSVKKQGQR HEGAAALTLS 600 WMDQPLYTVS AWTPVDVAGG SSSSFSQPS

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRTE AAAQLQACHF QLPSMSTQRL DLPCSFPRKD SSRSQPIRPV  60
GLSVEKTSID SKTSTCSLKQ SIRLPPLATS RPAATIQAEV KDQFWEKRGK GLKRFAEVDD  120
EEGEDESIRN RPGFHVPRSV QAITGIDPPQ FPYTFPNNPW LQSVVTEITD LKDGETSHAP  180
VGEPSGDSST SSGNQSLGLR VNESVSEPEG GVGSGHGHNP YGDAGVEAED EEESEVEQQG  240
FELLSLLNAC IEAIGMKNIA AINHFIAKLG ELASPKGSAI SRLTAYYTEA LALRVTRLWP  300
HVFQISPPRE FDRGDDESGT AMRLLNQVSP IPKFLHFTSN EILLRAFEGK DRVHIIDFDI  360
KLGLQWPSLF QSLASRTNPP SHVRITGVGE SKQELNETGD RLAGFAGALN LPFEFHPVVD  420
RLEDVRLWML HVKEQESVAV NCAFQLHKTL YDTTGGAFRD FLGLIRSTNP TIVLMAEQEA  480
EHNEPRLEAR VSNSLRYYSA IFDLIGSSLP LDSPARIKVE DTVAREIRNI VACEGSDRLE  540
RHEGFEKWRM LMEQGGFRCN GITDREFLQS QFLLKMYECE NYSVKKQGQR HEGAAALTLS  600
WMDQPLYTVS AWTPVDVAGG SSSSFSQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-69	225	614	1	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298743.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A2P6P7B8	0.0	A0A2P6P7B8_ROSCH; Putative transcription factor GRAS family
STRING	XP_004298743.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9161	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein