PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000469.1.g00007.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 351aa MW: 40580.1 Da PI: 4.7763

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000469.1.g00007.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.4	1.1e-26	177	226	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk++sl FANhyb_rscf00000469.1.g00007.1 177 KLLSRETISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 226 67899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.848	162	246	IPR003035	RWP-RK domain
Pfam	PF02042	5.3E-22	179	226	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MSNPNWVVSN ENPFSFANQF SPADFSGYAP VLDWENEVQP MVQDYSFVDA LPFMETCLNL 60 HDHDPLYSSL DIQPIRSLFQ DSERVGDDVL FGDNANETEN VVHNEVFASG FEHPNHDHDQ 120 QEQQQQEKQQ PILLLTSNED QNGGDREHVG EERKHKKRCM RDEVKSGSST RSYSSSKLLS 180 RETISQYFYM PITQAAKELN VGLTLLKKRC RELGIRRWPH RKLTSLQTLI RNIQVNIQEL 240 GKEEDDNNEE KLRNAIELLE REKKLMEEAP DMQLEDHTKR LRQACFKANY KKRKIMGMNL 300 IDYPPHSSNF SFVDNRGGKS MAIIDNGEDE EDEEIKSLLS DSFSSSVSMM I

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MSNPNWVVSN ENPFSFANQF SPADFSGYAP VLDWENEVQP MVQDYSFVDA LPFMETCLNL  60
HDHDPLYSSL DIQPIRSLFQ DSERVGDDVL FGDNANETEN VVHNEVFASG FEHPNHDHDQ  120
QEQQQQEKQQ PILLLTSNED QNGGDREHVG EERKHKKRCM RDEVKSGSST RSYSSSKLLS  180
RETISQYFYM PITQAAKELN VGLTLLKKRC RELGIRRWPH RKLTSLQTLI RNIQVNIQEL  240
GKEEDDNNEE KLRNAIELLE REKKLMEEAP DMQLEDHTKR LRQACFKANY KKRKIMGMNL  300
IDYPPHSSNF SFVDNRGGKS MAIIDNGEDE EDEEIKSLLS DSFSSSVSMM I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011465692.1	0.0	PREDICTED: protein RKD2
TrEMBL	A0A2P6P2Q2	1e-130	A0A2P6P2Q2_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004301148.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	8e-46	RWP-RK domain-containing protein