PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000471.1.g00007.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LSD

Protein Properties

Length: 92aa MW: 10075.6 Da PI: 8.1513

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000471.1.g00007.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.6	4.9e-14	3	27	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP+GA++V+C++C+tV FANhyb_rscf00000471.1.g00007.1 3 CGSCRRLLTYPPGAKHVQCSCCQTV 27 ************************9 PP
2	zf-LSD1	46.1	8e-15	41	65	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C tlL+YP+GApsVRC++C +V FANhyb_rscf00000471.1.g00007.1 41 CDSCTTLLMYPYGAPSVRCSSCSFV 65 **********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.3E-17	1	30	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.6E-12	3	27	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.3E-12	38	66	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.8E-12	41	65	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MVCGSCRRLL TYPPGAKHVQ CSCCQTVNFV LEAHQVGQVK CDSCTTLLMY PYGAPSVRCS 60 SCSFVTEVKD HNMRPPWSVQ QGQPTAPSNS VH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294024.2	7e-64	PREDICTED: protein LOL2
Swissprot	O65426	1e-39	LOL2_ARATH; Protein LOL2
TrEMBL	A0A2P6Q408	8e-57	A0A2P6Q408_ROSCH; Putative transcription factor Znf-LSD family
STRING	XP_004294024.1	4e-63	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	6e-42	lsd one like 2