PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000489.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TALE

Protein Properties

Length: 932aa MW: 105444 Da PI: 8.1193

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000489.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.6	1.3e-10	791	828	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +e++ LA+++gL+ +qV++WF N R + FANhyb_rscf00000489.1.g00005.1 791 FEHflHPYPSDSEKQMLAQQTGLSRTQVSNWFINSRVR 828 554458******************************88 PP
2	BELL	76.7	3.4e-25	686	753	2	69
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 r elq k + L +l+eV+krYk y++q++ v++sFe++ g+g+a+pY s+A ka+ +hF Lk+ai FANhyb_rscf00000489.1.g00005.1 686 RFELQFKNSSLAIMLDEVYKRYKLYCQQMESVVASFETIDGIGNAAPYMSFAIKAVLKHFGFLKNAIL 753 779***************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.1250.20	2.8E-7	74	238	No hit	No description
CDD	cd06174	2.25E-8	77	488	IPR020846	Major facilitator superfamily domain
Pfam	PF00854	2.8E-24	127	237	IPR000109	Proton-dependent oligopeptide transporter family
SuperFamily	SSF103473	1.64E-15	171	255	IPR020846	Major facilitator superfamily domain
Pfam	PF00854	2.1E-46	291	492	IPR000109	Proton-dependent oligopeptide transporter family
SuperFamily	SSF103473	1.64E-15	297	530	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	2.8E-7	352	365	No hit	No description
Gene3D	G3DSA:1.20.1250.20	1.7E-5	366	486	No hit	No description
SMART	SM00574	3.3E-24	633	754	IPR006563	POX domain
Pfam	PF07526	8.5E-27	638	752	IPR006563	POX domain
SMART	SM00389	4.5E-8	771	836	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.17E-17	774	842	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-28	775	836	IPR009057	Homeodomain-like
CDD	cd00086	1.63E-11	775	833	No hit	No description
Pfam	PF05920	6.8E-18	789	828	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	12.438	791	832	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006810	Biological Process	transport
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding
GO:0005215	Molecular Function	transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MNRQEVEKRL KRSGGETRRE EENLVHDSSI DYEGRVPLRA STGVWKASLF IEATDNNKSV 60 EFVPESAIEF SERLSYFGIA TNLITYLTQV LHQDIKTAAK NVNYWTGVTT IMPLIGGFLA 120 DAYTGRFNMV MFASLVYLMG LSLLTMSQFI PSLKPCKTEI CRQPRKLHEV LLFVALYFIS 180 VGTGGHKPCL QSFGADQFDD DHLEERKKKM SFFNWWNFAL CCGLFLGVTV IVYVQDSVLV 240 AAIRKRNLPN PQNPDLLFEV PMEGFYFTQI GSDKAAIIDR EESENYQSCE QKHNPWRLAT 300 LTRVEELKLI LNMIPIWLTL LPNTVCLAQA STFFVKQAAT MNRNITNNFK IPPASIFSLG 360 AIAMLVSVMV YDKVLVPMLR KATGNERGMN ILHRIGVGMI LVVIAMAVTA LVERKRLQYA 420 DPQAMSVFWL APQYIILGIG DAFALVGLQE YFYDQVPDSM RSLGVALYLS VIGVGSFLSS 480 FLISVLDHVT EKYGRSWFGK DLSGSRLDNF FWLLAALNGL NLCVYGYLAR GYTYKNVDRR 540 VALGDHSVTN GNDQFIGEGF EAFDVPQQSR RDHFRVMNLL TNPPQPQLSL FTPSSTIPTH 600 QPPLPLHFSD HDHHRVFERG EFRSSLVPLG PFTGYASILK HSRFLNPAQQ LLQDSCGSDR 660 SDSNPPRLLN YFNERARDQI IGVSDRFELQ FKNSSLAIML DEVYKRYKLY CQQMESVVAS 720 FETIDGIGNA APYMSFAIKA VLKHFGFLKN AILDILQSKG KSTVGDFSLV KDDIRGGLPE 780 TAVSVMRTWL FEHFLHPYPS DSEKQMLAQQ TGLSRTQVSN WFINSRVRLW KPMVEEIHSL 840 ETQQSPMISN SDVTRRNTRT APSLGSYSLE NPLHLGTLPQ TKRSRTNKHL DMSEQNETQS 900 NAAAYENITR NYLHMNSHEG EVSLALSLHA RK

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MNRQEVEKRL KRSGGETRRE EENLVHDSSI DYEGRVPLRA STGVWKASLF IEATDNNKSV  60
EFVPESAIEF SERLSYFGIA TNLITYLTQV LHQDIKTAAK NVNYWTGVTT IMPLIGGFLA  120
DAYTGRFNMV MFASLVYLMG LSLLTMSQFI PSLKPCKTEI CRQPRKLHEV LLFVALYFIS  180
VGTGGHKPCL QSFGADQFDD DHLEERKKKM SFFNWWNFAL CCGLFLGVTV IVYVQDSVLV  240
AAIRKRNLPN PQNPDLLFEV PMEGFYFTQI GSDKAAIIDR EESENYQSCE QKHNPWRLAT  300
LTRVEELKLI LNMIPIWLTL LPNTVCLAQA STFFVKQAAT MNRNITNNFK IPPASIFSLG  360
AIAMLVSVMV YDKVLVPMLR KATGNERGMN ILHRIGVGMI LVVIAMAVTA LVERKRLQYA  420
DPQAMSVFWL APQYIILGIG DAFALVGLQE YFYDQVPDSM RSLGVALYLS VIGVGSFLSS  480
FLISVLDHVT EKYGRSWFGK DLSGSRLDNF FWLLAALNGL NLCVYGYLAR GYTYKNVDRR  540
VALGDHSVTN GNDQFIGEGF EAFDVPQQSR RDHFRVMNLL TNPPQPQLSL FTPSSTIPTH  600
QPPLPLHFSD HDHHRVFERG EFRSSLVPLG PFTGYASILK HSRFLNPAQQ LLQDSCGSDR  660
SDSNPPRLLN YFNERARDQI IGVSDRFELQ FKNSSLAIML DEVYKRYKLY CQQMESVVAS  720
FETIDGIGNA APYMSFAIKA VLKHFGFLKN AILDILQSKG KSTVGDFSLV KDDIRGGLPE  780
TAVSVMRTWL FEHFLHPYPS DSEKQMLAQQ TGLSRTQVSN WFINSRVRLW KPMVEEIHSL  840
ETQQSPMISN SDVTRRNTRT APSLGSYSLE NPLHLGTLPQ TKRSRTNKHL DMSEQNETQS  900
NAAAYENITR NYLHMNSHEG EVSLALSLHA RK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4oh3_A	2e-85	31	542	17	574	Nitrate transporter 1.1
4oh3_B	2e-85	31	542	17	574	Nitrate transporter 1.1
5a2n_A	1e-85	31	542	17	574	PROTEIN NRT1/ PTR FAMILY 6.3
5a2n_B	1e-85	31	542	17	574	PROTEIN NRT1/ PTR FAMILY 6.3
5a2o_A	1e-85	31	542	17	574	NITRATE TRANSPORTER 1.1
5a2o_B	1e-85	31	542	17	574	NITRATE TRANSPORTER 1.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307585.2	0.0	PREDICTED: protein NRT1/ PTR FAMILY 5.6-like
Swissprot	Q9M331	0.0	PTR45_ARATH; Protein NRT1/ PTR FAMILY 5.7
TrEMBL	A0A2P6SKT7	0.0	A0A2P6SKT7_ROSCH; Putative proton-dependent oligopeptide transporter family, major facilitator superfamily
STRING	XP_004308908.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2810	33	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	2e-58	BEL1-like homeodomain 8

Publications ? help Back to Top
Maathuis FJ cGMP modulates gene transcription and cation transport in Arabidopsis roots. Plant J., 2006. 45(5): p. 700-11 [PMID:16460505] Tsay YF,Chiu CC,Tsai CB,Ho CH,Hsu PK Nitrate transporters and peptide transporters. FEBS Lett., 2007. 581(12): p. 2290-300 [PMID:17481610] Li JY, et al. The Arabidopsis nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance. Plant Cell, 2010. 22(5): p. 1633-46 [PMID:20501909] Léran S, et al. A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends Plant Sci., 2014. 19(1): p. 5-9 [PMID:24055139]