PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000514.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 817aa MW: 89840.3 Da PI: 5.8017

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000514.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.5e-29	502	552	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ FANhyb_rscf00000514.1.g00001.1 502 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 552 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.268	491	572	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-26	505	552	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
FGFLTIITNA DTNPVAQKRK ENEDNRIIPS PFSGPEPNAD GYFLIKERIT QALRHLKESS 60 DQHVLAQVWA PVRDGNRYVL TTSGQPFVLD PHDGLHQYRM VSLMYMFSVD GDNDGVLGLP 120 GRVFQQKLPE WTPNVQYYSI KEYPRLDHAQ HYNVQGTLAL PVFEPSGRSC IGVIELIMTS 180 QKINYAPEVD KICKALEAVS LKSSEMLDHT STQIQIRNEG RQTALTEILE ILTMVCETHK 240 LPLAQTWVPC MHRNVLAYGG GMKKSCTSFD GSCMEQVCMS TTDVAVYIVD AHMWGFREAC 300 VEHHLQKGQG VAGRAFLSSN ACFCRDISQF RKTEYPLVHY ARMFRLTSSF AICLQSTRTG 360 NDDYILEFFL PPSITVSSEQ QTLLGSILAI VKGHCQNLKV ASGIGLAEEG IVEIVQASIN 420 EGLDSRLECI QIPRSVEPLP GSSLPNREEI VHLDPAKPQL MVDINAINDE RNAVHKGGKN 480 NISVPENKDM KKTSERKGGK TEKSISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG 540 ISRWPSRKIN KVNRSLSKLK LVIESVQGGE GAFGLSPLTT SPLTGAVGSN SRPFTSSQPY 600 EVQGEKKDSP NSSSPGREGQ AGIGDPDIGR GSNSSKTGSG SREASTGTPT SHGSCQGSPA 660 NGSAMAKEPF VSFMHEQFAE VDRSPESAFR PPDEVYVPVL CSIPDALLIT EPEEPSRGMQ 720 LEDAGSSKDL RNLCPFADLT VDEQVPEGEA YHDFKCSGND THNHGALSVC MGKIENQKAK 780 NTNENEPLEE SPEALWTSFF YEISSSKKED DDVKDLD

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

FGFLTIITNA DTNPVAQKRK ENEDNRIIPS PFSGPEPNAD GYFLIKERIT QALRHLKESS  60
DQHVLAQVWA PVRDGNRYVL TTSGQPFVLD PHDGLHQYRM VSLMYMFSVD GDNDGVLGLP  120
GRVFQQKLPE WTPNVQYYSI KEYPRLDHAQ HYNVQGTLAL PVFEPSGRSC IGVIELIMTS  180
QKINYAPEVD KICKALEAVS LKSSEMLDHT STQIQIRNEG RQTALTEILE ILTMVCETHK  240
LPLAQTWVPC MHRNVLAYGG GMKKSCTSFD GSCMEQVCMS TTDVAVYIVD AHMWGFREAC  300
VEHHLQKGQG VAGRAFLSSN ACFCRDISQF RKTEYPLVHY ARMFRLTSSF AICLQSTRTG  360
NDDYILEFFL PPSITVSSEQ QTLLGSILAI VKGHCQNLKV ASGIGLAEEG IVEIVQASIN  420
EGLDSRLECI QIPRSVEPLP GSSLPNREEI VHLDPAKPQL MVDINAINDE RNAVHKGGKN  480
NISVPENKDM KKTSERKGGK TEKSISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG  540
ISRWPSRKIN KVNRSLSKLK LVIESVQGGE GAFGLSPLTT SPLTGAVGSN SRPFTSSQPY  600
EVQGEKKDSP NSSSPGREGQ AGIGDPDIGR GSNSSKTGSG SREASTGTPT SHGSCQGSPA  660
NGSAMAKEPF VSFMHEQFAE VDRSPESAFR PPDEVYVPVL CSIPDALLIT EPEEPSRGMQ  720
LEDAGSSKDL RNLCPFADLT VDEQVPEGEA YHDFKCSGND THNHGALSVC MGKIENQKAK  780
NTNENEPLEE SPEALWTSFF YEISSSKKED DDVKDLD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301816.2	0.0	PREDICTED: protein NLP6
Refseq	XP_011465369.1	0.0	PREDICTED: protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A2P6P3X3	0.0	A0A2P6P3X3_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004301816.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]