PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000532.1.g00010.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 123aa MW: 13913.3 Da PI: 10.2971

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000532.1.g00010.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.8	3.3e-09	37	60	23	46
HHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 23 KAeELSvLCdaevaviifsstgkl 46 K ELSvLCd+ v++i+++++gk+ FANhyb_rscf00000532.1.g00010.1 37 KVWELSVLCDVIVSLIVIGPDGKV 60 667*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.27E-9	29	84	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.1E-7	34	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MAPKNSNNSF VKKLLADNNG YLKAATKATK CYKLKNKVWE LSVLCDVIVS LIVIGPDGKV 60 SKENLDEVKS ILREYWLKKR LDRSSDHLLE VVLEKSRRGL WISTATGCRR RSYGICGIVW 120 SPS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34147	2	2