PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000548.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 911aa    MW: 101327 Da    PI: 7.5369
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000548.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS247.16.9e-76503732305
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal...ppsetseknssee 77 
                                     ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r +r ++++ +      ++++s+++s+++
  FANhyb_rscf00000548.1.g00002.1  50 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRSSRICPSVNSFNgggGSNPSSSSTSTST 128
                                     689************************************************9999999987653322222222222222 PP

                            GRAS  78 laal.kl........fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTg 146
                                     +aa  +l        ++++ P+++f++ + N+aI +a++g++++Hi+Df+i++++QWp+L++aL +Rpegpp slR+T+
  FANhyb_rscf00000548.1.g00002.1 129 TAAErRLmtvtelagYVDLIPWHRFGYCASNSAIFQAIQGCSKIHILDFSITHCMQWPTLIDALGKRPEGPPeSLRVTV 207
                                     222222234456689*****************************************************99888*****9 PP

                            GRAS 147 vgspesg...skeeleetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldes 217
                                      +    +    + ++ee+g rL +f +  +vpfefnv+      +  l++l++ +L+++ +Eal+Vn++  l +l d++
  FANhyb_rscf00000548.1.g00002.1 208 PSCRPLVpplLNVSIEEVGLRLGNFSRFRDVPFEFNVIensssFELLLSQLNPTSLNLDDDEALVVNCQNWLRYLSDDE 286
                                     8875555889999************************9644433334567799************************** PP

                            GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                                     +s++s+r+++L +++ l+P+++vvv++++d++s+s+  r++ +++y +  fdsle+ lp++s++r+ +E   +g++i+n
  FANhyb_rscf00000548.1.g00002.1 287 GSSNSARNTFLTMIRCLNPRIIVVVDEDSDLSSPSLSSRITTCFNYLWIPFDSLETFLPKDSNQRMEYEFD-IGQKIEN 364
                                     *********************************************************************99.******* PP

                            GRAS 297 vvacegaer 305
                                     ++  eg+e+
  FANhyb_rscf00000548.1.g00002.1 365 IIGFEGFEK 373
                                     ******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.11823429IPR005202Transcription factor GRAS
PfamPF035142.4E-7350373IPR005202Transcription factor GRAS
PROSITE profilePS5164972.501558809IPR027356NPH3 domain
PfamPF030001.2E-63558785IPR027356NPH3 domain
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MKTEVRVGSS TSIAALQSPS LLINNTTSQG ASLTGALRGC LGSLDGACIE KLLLHCASAL  60
ESNDVTLAQQ VMWVLNNVAS SVGDPNQRLT SWILRALISR SSRICPSVNS FNGGGGSNPS  120
SSSTSTSTTA AERRLMTVTE LAGYVDLIPW HRFGYCASNS AIFQAIQGCS KIHILDFSIT  180
HCMQWPTLID ALGKRPEGPP ESLRVTVPSC RPLVPPLLNV SIEEVGLRLG NFSRFRDVPF  240
EFNVIENSSS FELLLSQLNP TSLNLDDDEA LVVNCQNWLR YLSDDEGSSN SARNTFLTMI  300
RCLNPRIIVV VDEDSDLSSP SLSSRITTCF NYLWIPFDSL ETFLPKDSNQ RMEYEFDIGQ  360
KIENIIGFEG FEKALVLHSF VTHHLLGSRV VSSYSGKLSK LLGKSKGSTR NLKVVFHDFP  420
GGAESFELIS RFCYNNGSID INPSNISLLH FAAIFMEMNI SVSGARNLFE KTEKSLEEMR  480
YWTWSELLIT LKQCQDLLPA TNCLPLLEKC LDCIVGRLAL TSEASPCPST SSPDSSGIRF  540
SCDTRSTESL KTSSSRATWW FEDLLVLGPN LVEMLVKSMV TRKFDHVTIS RFLFYYQKSK  600
FYTAKSDAKR TIAETVIDML HILDQSSVSC KTLFWILRVV QNMNINKSIR NKLESMIGSQ  660
LDQASLDNLL VPSPHGINHL YDVNLVLRVL NSFLRGGTAK ASPVRLRKVG VLVDMYIAEV  720
APDPCLRPSK FLALAMALPD AARDSYDELY RAIDMYLEVH GGLSEEEKMK LCCLLNYEKL  780
SQEVCIHLSQ NAKFPSKSAV QALISQQVKL KSLLQVTSNP KSYGDSPFSV TEVDNKGRKG  840
HDSNEQCVLY AGKLDISADN EKLREHLHGM QWRVMELEKM CKKMQTQMAK FTKSRVLSSH  900
SHARSLPKLC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-404336927344Protein SHORT-ROOT
5b3h_E1e-404336927344Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287910.10.0PREDICTED: BTB/POZ domain-containing protein At3g22104
SwissprotQ9C5J41e-167Y3210_ARATH; BTB/POZ domain-containing protein At3g22104
TrEMBLA0A498HB600.0A0A498HB60_MALDO; Uncharacterized protein
STRINGXP_004287910.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-84GRAS family protein
Publications ? help Back to Top
  1. Gingerich DJ, et al.
    Cullins 3a and 3b assemble with members of the broad complex/tramtrack/bric-a-brac (BTB) protein family to form essential ubiquitin-protein ligases (E3s) in Arabidopsis.
    J. Biol. Chem., 2005. 280(19): p. 18810-21
    [PMID:15749712]