PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000582.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 205aa    MW: 22516.7 Da    PI: 4.4995
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000582.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.12e-17794186
                        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsess 76
                                    +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k++ +++     
  FANhyb_rscf00000582.1.g00002.1  7 CWSEDATSTLIDAWGRRYVELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSGG---FN 84
                                    7****************************************99999***************************997...56 PP

                        trihelix 77 stcpyfdqle 86
                                    s++p+fd+l+
  FANhyb_rscf00000582.1.g00002.1 85 SSWPFFDRLD 94
                                    67******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.1E-28596No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MPVREDCWSE DATSTLIDAW GRRYVELNRG NLRQKDWQEV ADAVNALHGH TKKTHRTDVQ  60
CKNRIDTIKK KYKVEKARVS GGFNSSWPFF DRLDSLIGST VKKPSPSLSP PVAVPLPLAY  120
RKPSPARPVV TAVALPQKRS ASAAALNEGF LRMNYSAVAA AAAAENDDDD DEDEEEEEDN  180
DDGDEEAEVE KERDSDGETG GGGGE
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293945.11e-114PREDICTED: trihelix transcription factor ASIL2-like isoform X1
SwissprotQ9LJG87e-38ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A498JUD98e-88A0A498JUD9_MALDO; Uncharacterized protein
STRINGXP_004293944.11e-114(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-41sequence-specific DNA binding transcription factors