PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000584.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 896aa MW: 101752 Da PI: 6.5962

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000584.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.5	9.6e-23	141	225	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 +Y+eYA++vGF +++ +s++skr+g++++ ++ Cs++ k+e +++ +++ + +tgCka l++kk++d+kw++++ FANhyb_rscf00000584.1.g00002.1 141 YYREYARSVGFGITIIASRRSKRTGKFIDIKLACSRYRKQEAGDRE----KQSVNLINTGCKAGLHMKKREDEKWYIHS 215 9***********************************99998777....999999******************* PP FAR1 81 leleHnHela 90 +++eHnHe++ FANhyb_rscf00000584.1.g00002.1 216 FKKEHNHEMT 225 *****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-20	141	225	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.4E-27	306	398	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.902	586	622	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-5	594	620	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.1E-7	597	624	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MEIDLELPSC EQDKLDTRLN EDVNVVDAAD EINVGKKSEN VKEAHRLSAN ESVDDASNVG 60 VSVVDKGVVS TVDAGDEMNV EKSSEHVWEA GGSSANKSGS DFQGQGDVNN IVANVVDKAV 120 GVVRELEIGL EFETKEDAYS YYREYARSVG FGITIIASRR SKRTGKFIDI KLACSRYRKQ 180 EAGDREKQSV NLINTGCKAG LHMKKREDEK WYIHSFKKEH NHEMTAGFIA PGGRNKRPAT 240 VACQKKGLQF SLDEDDVKVM FEQLMCMQDE NPNFFYAIDF DPEKRLRSVF WVDSKGRRDY 300 NSFCDVVLFD TYYVRNNYKI PLVPIVGVNH HFQYILLGCA LIGDKTREAF VWLMRTWLKA 360 VGGQAPRVII TDQDKYLKEA VADVFTDACH RFCLWHVLTR INENVGCSIN EDATFLAKLN 420 KCIYRSWTFQ QFEQRWWKLI NRFELKENEC LCLLYEDREY WAPTYMQDSC SVGISTVERS 480 GSITSFFDRY ISQETPVKDF MEQYKAFLKD SYDMEATAAS EAQNKQPELR SLSPFEKQIS 540 TIYTDTIFRM FQVEALGVDS CHLQKDGQDE ATVIFRVHDL EERQNFIVAW NEPESRVCCL 600 CRSFEYKGFL CRHALLVLHM SGVPSIPSNY ILKRWMKDPR VGHTVSDVSK SLIYRVQRFN 660 DLCKLAVKLG EQGSLSPETY EIACHALEEV LKQCVHINKS VRGVSEPNAS SIHGSNDVEE 720 EKYSGAMVKL SKKKKTHRKR KGETEPDGIP VRFQDSCQKM ELINSGVHNL DSCRVSQQES 780 QGELGSKGCA QDSCYGAQQS MQEMGRLNSV SPIHDGSYGN QQASQGLLHT LPPRVGLYGT 840 QQSMQGMFQG QLGFRAPAVH SSFDIRDTLK DMEQSAGTSR FHGNTSKHPH NKHLPQ

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MEIDLELPSC EQDKLDTRLN EDVNVVDAAD EINVGKKSEN VKEAHRLSAN ESVDDASNVG  60
VSVVDKGVVS TVDAGDEMNV EKSSEHVWEA GGSSANKSGS DFQGQGDVNN IVANVVDKAV  120
GVVRELEIGL EFETKEDAYS YYREYARSVG FGITIIASRR SKRTGKFIDI KLACSRYRKQ  180
EAGDREKQSV NLINTGCKAG LHMKKREDEK WYIHSFKKEH NHEMTAGFIA PGGRNKRPAT  240
VACQKKGLQF SLDEDDVKVM FEQLMCMQDE NPNFFYAIDF DPEKRLRSVF WVDSKGRRDY  300
NSFCDVVLFD TYYVRNNYKI PLVPIVGVNH HFQYILLGCA LIGDKTREAF VWLMRTWLKA  360
VGGQAPRVII TDQDKYLKEA VADVFTDACH RFCLWHVLTR INENVGCSIN EDATFLAKLN  420
KCIYRSWTFQ QFEQRWWKLI NRFELKENEC LCLLYEDREY WAPTYMQDSC SVGISTVERS  480
GSITSFFDRY ISQETPVKDF MEQYKAFLKD SYDMEATAAS EAQNKQPELR SLSPFEKQIS  540
TIYTDTIFRM FQVEALGVDS CHLQKDGQDE ATVIFRVHDL EERQNFIVAW NEPESRVCCL  600
CRSFEYKGFL CRHALLVLHM SGVPSIPSNY ILKRWMKDPR VGHTVSDVSK SLIYRVQRFN  660
DLCKLAVKLG EQGSLSPETY EIACHALEEV LKQCVHINKS VRGVSEPNAS SIHGSNDVEE  720
EKYSGAMVKL SKKKKTHRKR KGETEPDGIP VRFQDSCQKM ELINSGVHNL DSCRVSQQES  780
QGELGSKGCA QDSCYGAQQS MQEMGRLNSV SPIHDGSYGN QQASQGLLHT LPPRVGLYGT  840
QQSMQGMFQG QLGFRAPAVH SSFDIRDTLK DMEQSAGTSR FHGNTSKHPH NKHLPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	732	736	KKKTH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303948.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
TrEMBL	A0A2P6S0P9	0.0	A0A2P6S0P9_ROSCH; Putative transcription factor FAR family
STRING	XP_004303948.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2