PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000587.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 215aa    MW: 23594.4 Da    PI: 6.2561
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000587.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.52.4e-153569133
                            GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33
                                    C++Cg ++  Tp +Rrgp+g+++LCnaCGl+++ k
  FANhyb_rscf00000587.1.g00005.1 35 CQHCGISEksTPAMRRGPNGPRSLCNACGLRWANK 69
                                    *****99999**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-82994IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.56E-73271No hitNo description
Gene3DG3DSA:3.30.50.105.6E-133469IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.43E-113469No hitNo description
PfamPF003201.8E-123569IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403562IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MHRKNGQFAS LKDPSKPIAG NCDSSDSTSC PESVCQHCGI SEKSTPAMRR GPNGPRSLCN  60
ACGLRWANKL TCIWSHGITT VCILNRKYLC SQFPNSGGKS YAVACRSGMT DGSPFTYIYL  120
VKLKRERNND DVGTLRDLTK AGRDISFDQN ELESPEENKP IALNAEVPPL RLGDQDMLET  180
AEAGRNQVSI QMENSSVNLD EQVSVFANNY GEPEI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458396.18e-57PREDICTED: GATA transcription factor 24-like isoform X3
TrEMBLA0A251MUF89e-55A0A251MUF8_PRUPE; Uncharacterized protein
STRINGXP_004290404.17e-55(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.14e-21ZIM-like 1