PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000590.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 331aa MW: 37030.4 Da PI: 9.6127

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000590.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.1	1.6e-40	18	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeelvv+yLkkk+++ +l+ +++ ++ ++ +e+ewyfFs+rd+ky++g r+nra++ FANhyb_rscf00000590.1.g00003.1 18 LPPGFRFHPTDEELVVHYLKKKASSAPLPH---------CHHRRKK----ATFGEQEWYFFSPRDRKYPNGARPNRAAT 83 79***********************877.........3333233....334789******************* PP NAM 80 sgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk+vls+ ++++vg+kk Lvfy+g+ pkg kt+W+mheyrl FANhyb_rscf00000590.1.g00003.1 84 SGYWKATGTDKPVLSStdegggGTRKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 138 ***********98888877778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-53	13	175	IPR003441	NAC domain
PROSITE profile	PS51005	43.813	18	174	IPR003441	NAC domain
Pfam	PF02365	6.3E-28	19	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MESTDSSSGS QPPPQPNLPP GFRFHPTDEE LVVHYLKKKA SSAPLPHCHH RRKKATFGEQ 60 EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSST DEGGGGTRKV GVKKALVFYR 120 GKPPKGIKTN WIMHEYRLAD NNTSNKPPPG CHDLGNKKNS LRLDDWVLCR IYKKNNTHRP 180 MDQEDSMDDM MGSSFPLSKL HRLPPKSTTS TYGQFMDNDH NFYDGMVSSE GINTSASFLP 240 NSGMANSSLP LKRGLPNLYW NHDQEDEAGL SRRLHLDNSE STGNGSIATL LSQLPQTPPP 300 LHQQPMLGSQ LGGDALFRST QYQLPGMNWY S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	10	177	9	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	10	177	9	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	10	177	9	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	10	177	9	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	10	177	12	171	NAC domain-containing protein 19
3swm_B	1e-55	10	177	12	171	NAC domain-containing protein 19
3swm_C	1e-55	10	177	12	171	NAC domain-containing protein 19
3swm_D	1e-55	10	177	12	171	NAC domain-containing protein 19
3swp_A	1e-55	10	177	12	171	NAC domain-containing protein 19
3swp_B	1e-55	10	177	12	171	NAC domain-containing protein 19
3swp_C	1e-55	10	177	12	171	NAC domain-containing protein 19
3swp_D	1e-55	10	177	12	171	NAC domain-containing protein 19
4dul_A	1e-55	10	177	9	168	NAC domain-containing protein 19
4dul_B	1e-55	10	177	9	168	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	53	KKKASSAPLPHCHHRRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291668.1	0.0	PREDICTED: NAC domain-containing protein 18-like
Swissprot	Q9LD44	2e-98	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2P6QB23	0.0	A0A2P6QB23_ROSCH; Putative transcription factor NAM family
STRING	XP_004291668.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	5e-88	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]