PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000602.1.g00007.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 209aa MW: 22737.9 Da PI: 8.658

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000602.1.g00007.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.2	2.5e-28	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a +++r+ +++sl+yeA+ r+ +P FANhyb_rscf00000602.1.g00007.1 4 SCNGCRVLRKGCSENCEIRPCIewiksPESQANATLFLAKFYGRAGLLNLINAGAQHQRPGIFKSLLYEACGRIVNPTF 82 6**************************************************************************** PP DUF260 75 Gavgvilklqqqleqlkaelall 97 G+vg+++++++ +q+++e++l+ FANhyb_rscf00000602.1.g00007.1 83 GSVGLLSSGNWAQCQAAVEAVLA 105 ****************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.02	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-22	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MRTSCNGCRV LRKGCSENCE IRPCIEWIKS PESQANATLF LAKFYGRAGL LNLINAGAQH 60 QRPGIFKSLL YEACGRIVNP TFGSVGLLSS GNWAQCQAAV EAVLAGLPIV ENNEPVPYLN 120 PVPPVNSCDI RHVSKDTSLG KTRNRFKRSR SKVQLGSITE AAAEWGRVNP LEFGQCSSGG 180 GGERSMQSVE TVEAPWEMNQ GQTGPGWKW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299077.1	1e-146	PREDICTED: LOB domain-containing protein 42
Swissprot	Q9CA30	2e-67	LBD42_ARATH; LOB domain-containing protein 42
Swissprot	Q9M886	3e-67	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2P6R1Q0	1e-120	A0A2P6R1Q0_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004299077.1	1e-145	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	2e-66	LOB domain-containing protein 42