PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000625.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 171aa MW: 19061.9 Da PI: 7.196

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000625.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	38.9	1.8e-12	140	161	2	23
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 +Dgy+WrKYGqK vk+s++prs FANhyb_rscf00000625.1.g00005.1 140 EDGYRWRKYGQKAVKNSPYPRS 161 8********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.6E-13	124	161	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-10	132	161	IPR003657	WRKY domain
PROSITE profile	PS50811	14.343	134	171	IPR003657	WRKY domain
SMART	SM00774	9.9E-5	139	170	IPR003657	WRKY domain
Pfam	PF03106	3.1E-8	140	161	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MSFADCLNGS MDYTTLSKAF DISCSSSEVI SPPLLDQDDH SKNKAAAAVV GDQNPSTPNS 60 SISCSSNEAG AARHHEHENN QDSDKISKKD KHQKVVQSAE EAPGDHEDES KKVNKAKKKE 120 KRQREPRFAF LTKSEIDHLE DGYRWRKYGQ KAVKNSPYPR SAEQFTIYSS A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	KEKRQR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303874.1	1e-114	PREDICTED: probable WRKY transcription factor 71
TrEMBL	A0A2P6S085	4e-88	A0A2P6S085_ROSCH; Putative transcription factor WRKY family
STRING	XP_004303874.1	1e-113	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2231	34	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46350.1	2e-21	WRKY DNA-binding protein 8