PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000660.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CO-like
Protein Properties Length: 425aa    MW: 46720.1 Da    PI: 5.168
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000660.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21.1e-052765538
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                     C+++++++++  C d ++ +C++C  + H++      H+
  FANhyb_rscf00000660.1.g00008.1 27 LCEKCNDQPATVRCLDVNMSFCQSCEWS-HNNgvtgmaHR 65
                                    6************************888.97767666665 PP
2CCT639.4e-22369412144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     R++a++RY eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  FANhyb_rscf00000660.1.g00008.1 369 RDKAKMRYEEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKSG 412
                                     899**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062031.5E-16369411IPR010402CCT domain
PROSITE profilePS5101714.793369411IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MARLCLNCDG CVHSANALAR RHARWFLCEK CNDQPATVRC LDVNMSFCQS CEWSHNNGVT  60
GMAHRNQAIS FYTGCPSLSE IFRIWSAVLE GSSASGGFGG SGWESLGGTM VSKNEKNCIN  120
SCRDSEASSF GVVSAGNKLN EVLADSNCTP DFEPWMATST VIPSNPNCIQ PQCKDQTPLP  180
FLPQESSQLP KLQGSSNLKD LGIQDGNDLC EGLNMDDVPL DVENDDELFS CSQGPSRYPF  240
EDGEFDCLLM DQKNLSVTES NGPHCDNAIQ QASPSRQQDC TLGFQSSCDS VMPPVMNAGL  300
LMNPSCSRNI NLEGLLNPTG QVHSSISLSL SSITRDTTHP DYQDCGLSPV FLSAEPWDST  360
LEAGSPRARD KAKMRYEEKK KTRTFGKQIR YASRKARADT RKRVKGRFVK SGEEYDYDPL  420
TRRSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463093.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11 isoform X1
TrEMBLA0A2P6S2F30.0A0A2P6S2F3_ROSCH; Putative transcription factor C2C2-CO-like family
STRINGXP_004289156.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-76B-box type zinc finger protein with CCT domain