PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000662.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family RAV
Protein Properties Length: 229aa    MW: 26137.9 Da    PI: 7.634
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000662.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.8e-1052881253
                             AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                                     g+W A+I        +kr+slg++ t+ eAa a+++a++k+
  FANhyb_rscf00000662.1.g00003.1 52 GGKWGARISYN-----YKRYSLGTYETEIEAAIAYDRAALKM 88
                                    69*****7762.....5**********99**********997 PP
2B336.49.5e-12135215381
                                     EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                              B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                     k+lt  dv+ ++ + +  ++a+ h   ++ +  + t tl d +g sW + ++y+   ++++l +GW +F +  +Lke+D
  FANhyb_rscf00000662.1.g00003.1 135 KELTLMDVTHKC-FLVQGDYASLHfptKEHECLNSTATLWDIHGLSWMFGCSYWHITKSFLLNSGWGDFLEKYNLKEKD 212
                                     666666666666.7779999999988744455677******************************************** PP

                                     EEE CS
                              B3  79 fvv 81 
                                      v+
  FANhyb_rscf00000662.1.g00003.1 213 LVI 215
                                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-124297IPR016177DNA-binding domain
SMARTSM003802.2E-543103IPR001471AP2/ERF domain
PROSITE profilePS5103212.33943102IPR001471AP2/ERF domain
CDDcd000182.63E-134396No hitNo description
Gene3DG3DSA:3.30.730.103.8E-105198IPR001471AP2/ERF domain
PfamPF008472.5E-55288IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.8E-13130215IPR015300DNA-binding pseudobarrel domain
CDDcd100179.91E-12133215No hitNo description
SuperFamilySSF1019361.63E-11133214IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-8135214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSIDLSSDST IEMVVQDRNL PVTSPSHQNR RAGSSQQGSS SSKLKGLVPL KGGKWGARIS  60
YNYKRYSLGT YETEIEAAIA YDRAALKMPR AHSLNFHRSN YTIEESAFQS QHSIEDILKI  120
FMKEQGIVYE CVLQKELTLM DVTHKCFLVQ GDYASLHFPT KEHECLNSTA TLWDIHGLSW  180
MFGCSYWHIT KSFLLNSGWG DFLEKYNLKE KDLVIKDIIL RSPLVSMLM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465247.11e-132PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
TrEMBLA0A3Q8TB281e-142A0A3Q8TB28_FRAAN; Transcription factor RAV1
STRINGXP_004301744.11e-126(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16118910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-15RAV family protein