PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000662.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 387aa    MW: 43975.4 Da    PI: 5.901
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000662.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-1424764197
                                    TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                              B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                                    ++gr+W+v +  +k   +++++ GW++Fv++ngLk g+++vF++ g+s+f  +v +f
  FANhyb_rscf00000662.1.g00005.1 24 TRGRTWNVSV--EKVNHKFYFQLGWNGFVQDNGLKCGEILVFHYAGNSQF--HVEIF 76
                                    68********..999999****************************9*99..99988 PP
2B356.16.6e-18290382198
                                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                     f+  +++s+++ +  l +p +fa+eh  ++ ++  + + + + r W+vk+  +  + ++ l++GW++Fv++n+Lk gD+
  FANhyb_rscf00000662.1.g00005.1 290 FVISMSTSYASGKF-LNVPWSFAAEHHTNP-QPGHI-ILNVDKRFWSVKV--NYIGTTTKLQAGWSKFVRDNNLKFGDV 363
                                     55667777777776.***********6554.44345.57889********..66666677******************* PP

                                     EEEEE-SSSEE..EEEEE- CS
                              B3  80 vvFkldgrsefelvvkvfr 98 
                                     +vF l++  efe+vv +fr
  FANhyb_rscf00000662.1.g00005.1 364 CVFVLTNAIEFEYVVEIFR 382
                                     *****999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.676179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-16480IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16481IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.004879IPR003340B3 DNA binding domain
PfamPF023625.3E-122476IPR003340B3 DNA binding domain
CDDcd100174.02E-122676No hitNo description
SuperFamilySSF1019369.42E-21283382IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-20283381IPR015300DNA-binding pseudobarrel domain
CDDcd100175.49E-17288382No hitNo description
PROSITE profilePS5086312.717289384IPR003340B3 DNA binding domain
SMARTSM010196.4E-13290384IPR003340B3 DNA binding domain
PfamPF023622.1E-15290382IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEKLPSAFLQ CLNGRVPPQC GLQTRGRTWN VSVEKVNHKF YFQLGWNGFV QDNGLKCGEI  60
LVFHYAGNSQ FHVEIFGINT CKKLHVMPEM EEANEHDDVS PEILDDLPPC PRKIEEKSFL  120
SSPLPHKRSK ASSSGKADIT LNFLKRLPHL EKSAMKKKDS HRSESKMISI SDNDSGGEDH  180
LDEKEYEDDD HDEEGDAKNE DDEEEETEDE EKEEDDDSIE TLSDSPGCSR TVRKYTLASS  240
LHQRKRKRYT AKAKTKIKAV GVLSSEEKIL KAIAIQRACT FKFNSDNPCF VISMSTSYAS  300
GKFLNVPWSF AAEHHTNPQP GHIILNVDKR FWSVKVNYIG TTTKLQAGWS KFVRDNNLKF  360
GDVCVFVLTN AIEFEYVVEI FRITDAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465809.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6RMW01e-166A0A2P6RMW0_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301742.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2625423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-14B3 family protein