PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000665.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 352aa    MW: 40322.4 Da    PI: 10.5391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000665.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.51.5e-2013822251128
                             NAM  51 vkaeekewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdW 121
                                     v++e +  +fF++ +k+y+tg+rk+r+++      + +W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+W
  FANhyb_rscf00000665.1.g00005.1 138 VNKEGQIRHFFHRPSKAYTTGTRKRRKVHteedgsETRWHKTGKTRPVLT-NGAVKGFKKILVLYtnYGRQRKPEKTNW 215
                                     44445556******************744446555778************.999***********66589********* PP

                             NAM 122 vmheyrl 128
                                     vmh+y+l
  FANhyb_rscf00000665.1.g00005.1 216 VMHQYHL 222
                                     *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.38979241IPR003441NAC domain
SuperFamilySSF1019411.01E-23141241IPR003441NAC domain
PfamPF023653.3E-8145222IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MCNMTILIQL DIFHKLQLGF ASVEQQQIDF CAEAKQKRIY ITINPKQADK VLLYKTLIHT  60
LSATKIQHQI KLPSPGSFLL RGFAQKASCS LIYMQIDLYI RVAVILYNNK WKKTLKTVDV  120
RIRYGGRYRS RAAKAKRVNK EGQIRHFFHR PSKAYTTGTR KRRKVHTEED GSETRWHKTG  180
KTRPVLTNGA VKGFKKILVL YTNYGRQRKP EKTNWVMHQY HLGNNEEEKD GELVLSKVFY  240
QTQPRQCGTG TPSIRDGGPP LLNPFDSHHY KGQVNIRSGQ DGIPLPIPPK KAGVMEYYNH  300
NHPGPFMNYD HPHLIQGGQN REIPAQLIPN MVLQGDGSSL FRYNAADTSK GN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293895.11e-158PREDICTED: NAC domain-containing protein 8 isoform X1
SwissprotF4HY613e-64NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A1L1Y2871e-156A0A1L1Y287_9ROSA; NAC transcription factor 1
STRINGXP_004293895.11e-157(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1987955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-66NAC domain containing protein 10